| SRR358795 | callus | wt | 6.88 | MC |
| SRR358796 | callus | wt | 6.26 | MC |
| SRR358797 | callus | wt | 6.94 | MC |
| SRR358798 | callus | wt | 7.36 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.67 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.76 | MC |
| SRR7265377 | embryo | 1hA | 0.82 | MC |
| SRR7265378 | embryo | 1hA | 0.53 | MC |
| SRR7265379 | embryo | 1hN | 0.36 | MC |
| SRR7265381 | embryo | 1hN | 0.25 | MC |
| SRR7265387 | embryo | 3hN | 0.53 | MC |
| SRR8240820 | leaf | wild_type | 0.29 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.96 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.67 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.57 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.15 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.51 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.37 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126155 | root | "mock,7_days" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 2.25 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.34 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.88 | MC |
| SRR5126165 | root | "mock,14_days" | 1.98 | MC |
| SRR5126167 | root | "mock,14_days" | 1.53 | MC |
| SRR5126169 | root | "mock,14_days" | 2.12 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.86 | MC |
| SRR2154085 | seedling | wt | 3.16 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.30 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.29 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.01 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.74 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.82 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.46 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.50 | MC |