| SRR4457250 | 2nd_leaf | DAH4 | 0.73 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.44 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.08 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.90 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.90 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.15 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.33 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.51 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.57 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.80 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.01 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.90 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.54 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.98 | MC |
| SRR3745126 | anther | wt | 0.65 | MC |
| SRR358795 | callus | wt | 5.72 | MC |
| SRR358796 | callus | wt | 5.86 | MC |
| SRR358797 | callus | wt | 5.05 | MC |
| SRR358798 | callus | wt | 7.12 | MC |
| SRR6320498 | carpel | wt | 1.01 | MC |
| SRR5560727 | caryopsis | wild_type | 0.24 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR7265400 | coleoptile | 2dA | 3.19 | MC |
| SRR7265401 | coleoptile | 2dA | 3.48 | MC |
| SRR7265402 | coleoptile | 2dA | 3.33 | MC |
| SRR7265406 | coleoptile | 3dA | 2.66 | MC |
| SRR7265407 | coleoptile | 3dA | 2.27 | MC |
| SRR7265408 | coleoptile | 3dA | 0.99 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.54 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.65 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.67 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.40 | MC |
| SRR7265376 | embryo | 1hA | 0.69 | MC |
| SRR7265377 | embryo | 1hA | 0.73 | MC |
| SRR7265378 | embryo | 1hA | 1.12 | MC |
| SRR7265379 | embryo | 1hN | 0.32 | MC |
| SRR7265380 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 0.49 | MC |
| SRR7265385 | embryo | 3hN | 3.50 | MC |
| SRR7265386 | embryo | 3hN | 1.78 | MC |
| SRR7265387 | embryo | 3hN | 2.92 | MC |
| SRR2338866 | endosprem | control | 1.47 | MC |
| SRR2338867 | endosprem | control | 0.97 | MC |
| SRR2338868 | endosprem | high_temperature | 0.97 | MC |
| SRR2338869 | endosprem | high_temperature | 1.93 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.88 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.79 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.57 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.91 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.89 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.78 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.06 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.93 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.39 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.80 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.47 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.75 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.74 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.40 | MC |
| SRR1213691 | flower | wt | 0.48 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.20 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.39 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.46 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.73 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.54 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.87 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.53 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.60 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.20 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.92 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.92 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.28 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.76 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.49 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.37 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.58 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.57 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.45 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.73 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.72 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.73 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.72 | MC |
| SRR1761530 | leaf | control | 0.73 | MC |
| SRR1761531 | leaf | control | 0.72 | MC |
| SRR6417967 | leaf | H2O_control | 0.51 | MC |
| SRR6417968 | leaf | H2O_control | 0.38 | MC |
| SRR6417969 | leaf | H2O_control | 0.67 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.74 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.28 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR6502089 | leaf | control | 0.35 | MC |
| SRR6502090 | leaf | control | 0.60 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR5856936 | leaf | salt | 0.12 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.74 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.99 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.12 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.06 | MC |
| SRR6168975 | leaf | none (control) | 0.33 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.33 | MC |
| SRR8582888 | panicle | AM | 1.05 | MC |
| SRR8582889 | panicle | AM | 0.63 | MC |
| SRR8582890 | panicle | AM | 0.93 | MC |
| SRR5110429 | panicle | Dawn | 1.14 | MC |
| SRR5110430 | panicle | Dawn | 1.96 | MC |
| SRR5110431 | panicle | Dawn | 1.14 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.65 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.56 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.51 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.51 | MC |
| SRR5110445 | panicle | Dusk | 0.77 | MC |
| SRR5110447 | panicle | Dusk | 0.35 | MC |
| SRR5110448 | panicle | Dusk | 0.51 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.83 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.36 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.07 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.49 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.98 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.42 | MC |
| SRR1213695 | root | wt | 0.17 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.53 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.57 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.24 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR2154084 | seedling | wt | 0.40 | MC |
| SRR3098741 | seedling | wt | 0.48 | MC |
| SRR3098742 | seedling | wt | 0.51 | MC |
| SRR3098743 | seedling | wt | 0.59 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.52 | MC |
| SRR1944583 | seedling | no_treatment | 0.85 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.63 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.60 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.25 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.20 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.47 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.07 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.87 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.24 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.22 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.93 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.88 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.33 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.36 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.07 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.36 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.10 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.75 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.58 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.21 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.80 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.45 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.34 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |