| SRR3745125 | anther | wt | 1.80 | MC |
| SRR3745126 | anther | wt | 1.28 | MC |
| SRR3745127 | anther | wt | 1.36 | MC |
| SRR358795 | callus | wt | 2.43 | MC |
| SRR358796 | callus | wt | 3.78 | MC |
| SRR358797 | callus | wt | 3.07 | MC |
| SRR358798 | callus | wt | 3.45 | MC |
| SRR6320498 | carpel | wt | 1.17 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.45 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.55 | MC |
| SRR7265400 | coleoptile | 2dA | 1.32 | MC |
| SRR7265401 | coleoptile | 2dA | 1.42 | MC |
| SRR7265402 | coleoptile | 2dA | 1.34 | MC |
| SRR7265403 | coleoptile | 2dN | 2.28 | MC |
| SRR7265404 | coleoptile | 2dN | 2.27 | MC |
| SRR7265405 | coleoptile | 2dN | 1.87 | MC |
| SRR7265406 | coleoptile | 3dA | 1.44 | MC |
| SRR7265407 | coleoptile | 3dA | 1.18 | MC |
| SRR7265408 | coleoptile | 3dA | 0.97 | MC |
| SRR7265409 | coleoptile | 3dN | 1.05 | MC |
| SRR7265410 | coleoptile | 3dN | 1.21 | MC |
| SRR7265411 | coleoptile | 3dN | 1.03 | MC |
| SRR7265412 | coleoptile | 4dA | 1.76 | MC |
| SRR7265413 | coleoptile | 4dA | 3.25 | MC |
| SRR7265414 | coleoptile | 4dA | 2.17 | MC |
| SRR7265415 | coleoptile | 4dN | 1.43 | MC |
| SRR7265416 | coleoptile | 4dN | 0.89 | MC |
| SRR7265417 | coleoptile | 4dN | 1.15 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.07 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.48 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.25 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.78 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.38 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.81 | MC |
| SRR7265382 | embryo | 3hA | 1.83 | MC |
| SRR7265383 | embryo | 3hA | 1.84 | MC |
| SRR7265384 | embryo | 3hA | 1.99 | MC |
| SRR7265385 | embryo | 3hN | 2.23 | MC |
| SRR7265386 | embryo | 3hN | 1.65 | MC |
| SRR7265387 | embryo | 3hN | 2.08 | MC |
| SRR7265388 | embryo | 12hA | 1.84 | MC |
| SRR7265389 | embryo | 12hA | 1.72 | MC |
| SRR7265390 | embryo | 12hA | 1.63 | MC |
| SRR7265391 | embryo | 12hN | 2.09 | MC |
| SRR7265392 | embryo | 12hN | 2.38 | MC |
| SRR7265393 | embryo | 12hN | 2.42 | MC |
| SRR7265394 | embryo | 24hA | 1.11 | MC |
| SRR7265395 | embryo | 24hA | 1.71 | MC |
| SRR7265396 | embryo | 24hA | 1.58 | MC |
| SRR7265397 | embryo | 24hN | 3.56 | MC |
| SRR7265398 | embryo | 24hN | 3.00 | MC |
| SRR7265399 | embryo | 24hN | 2.46 | MC |
| SRR2338866 | endosprem | control | 2.31 | MC |
| SRR2338867 | endosprem | control | 0.96 | MC |
| SRR2338868 | endosprem | high_temperature | 1.58 | MC |
| SRR2338869 | endosprem | high_temperature | 3.16 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.10 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.96 | MC |
| SRR1213691 | flower | wt | 2.87 | MC |
| SRR8240824 | leaf | wild_type | 2.58 | MC |
| SRR8240825 | leaf | wild_type | 2.31 | MC |
| SRR8240826 | leaf | wild_type | 2.10 | MC |
| SRR8240818 | leaf | wild_type | 1.05 | MC |
| SRR8240819 | leaf | wild_type | 1.96 | MC |
| SRR8240820 | leaf | wild_type | 1.64 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.32 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.04 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.62 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.87 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.70 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.63 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.09 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.28 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.22 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.77 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.90 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.75 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.32 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.03 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.16 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.59 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.67 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.29 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.53 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.14 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.19 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.84 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.52 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.14 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.90 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.40 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.19 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.14 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.25 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.56 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.93 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.56 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.77 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.32 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.77 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.93 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.56 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.01 | MC |
| SRR6502100 | leaf | control | 2.35 | MC |
| SRR6502101 | leaf | control | 2.65 | MC |
| SRR6502102 | leaf | control | 2.92 | MC |
| SRR8582892 | panicle | PM | 7.51 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.56 | MC |
| SRR1633182 | panicle | WT | 2.46 | MC |
| SRR1633185 | panicle | WT | 2.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.43 | MC |
| SRR5126147 | root | "mock,1_day" | 1.89 | MC |
| SRR5126148 | root | "mock,1_day" | 2.05 | MC |
| SRR5126149 | root | "mock,1_day" | 2.77 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.28 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.79 | MC |
| SRR5126153 | root | "mock,7_days" | 2.10 | MC |
| SRR5126155 | root | "mock,7_days" | 3.31 | MC |
| SRR5126157 | root | "mock,7_days" | 4.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.12 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.31 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.24 | MC |
| SRR5126165 | root | "mock,14_days" | 1.91 | MC |
| SRR5126167 | root | "mock,14_days" | 2.46 | MC |
| SRR5126169 | root | "mock,14_days" | 4.12 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.85 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.73 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.86 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.70 | MC |
| SRR1213694 | root | wt | 1.21 | MC |
| SRR4947484 | root | Al | 3.11 | MC |
| SRR4947485 | root | Al | 3.93 | MC |
| SRR4947492 | root | Al | 3.31 | MC |
| SRR4947493 | root | Al | 3.55 | MC |
| SRR4947500 | root | Al | 4.93 | MC |
| SRR4947501 | root | Al | 5.06 | MC |
| SRR4947504 | root | control | 4.35 | MC |
| SRR4947505 | root | control | 5.10 | MC |
| SRR4947508 | root | Al | 4.30 | MC |
| SRR4947509 | root | Al | 3.03 | MC |
| SRR6502092 | root | 100 mM NaCl | 5.13 | MC |
| SRR6502094 | root | control | 3.25 | MC |
| SRR6502095 | root | control | 3.53 | MC |
| SRR6502096 | root | control | 3.85 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.15 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.90 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.80 | MC |
| SRR6502106 | root | control | 1.32 | MC |
| SRR6502107 | root | control | 1.09 | MC |
| SRR6502108 | root | control | 1.26 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.33 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.47 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.54 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.88 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.75 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.82 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.75 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.72 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.75 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.14 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.28 | MC |
| SRR1944583 | seedling | no_treatment | 4.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.94 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.71 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.49 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.38 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.95 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.41 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.92 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.59 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.47 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.39 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.74 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.49 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.48 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.14 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.39 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.19 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.45 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.36 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.10 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.81 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.48 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.61 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.95 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.85 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.96 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.13 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.01 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.68 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.57 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.47 | MC |