| SRR4457249 | 2nd_leaf | DAH4 | 2.29 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.73 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.06 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.09 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.68 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.24 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.66 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.78 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.96 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.40 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.91 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.47 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.53 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.77 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.34 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.02 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.53 | MC |
| SRR3745125 | anther | wt | 1.21 | MC |
| SRR3745126 | anther | wt | 0.63 | MC |
| SRR3745127 | anther | wt | 1.79 | MC |
| SRR358796 | callus | wt | 5.36 | MC |
| SRR358797 | callus | wt | 2.65 | MC |
| SRR358798 | callus | wt | 2.77 | MC |
| SRR6320473 | carpel | wt | 5.03 | MC |
| SRR6320498 | carpel | wt | 5.03 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.41 | MC |
| SRR7265400 | coleoptile | 2dA | 2.11 | MC |
| SRR7265401 | coleoptile | 2dA | 2.89 | MC |
| SRR7265402 | coleoptile | 2dA | 2.72 | MC |
| SRR7265403 | coleoptile | 2dN | 4.19 | MC |
| SRR7265405 | coleoptile | 2dN | 2.01 | MC |
| SRR7265406 | coleoptile | 3dA | 1.66 | MC |
| SRR7265407 | coleoptile | 3dA | 1.50 | MC |
| SRR7265408 | coleoptile | 3dA | 1.54 | MC |
| SRR7265409 | coleoptile | 3dN | 4.00 | MC |
| SRR7265410 | coleoptile | 3dN | 2.09 | MC |
| SRR7265412 | coleoptile | 4dA | 2.69 | MC |
| SRR7265413 | coleoptile | 4dA | 3.96 | MC |
| SRR7265414 | coleoptile | 4dA | 2.96 | MC |
| SRR7265415 | coleoptile | 4dN | 4.36 | MC |
| SRR7265416 | coleoptile | 4dN | 2.92 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.68 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.70 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.64 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.72 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.39 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.56 | MC |
| SRR7265376 | embryo | 1hA | 3.02 | MC |
| SRR7265380 | embryo | 1hN | 2.39 | MC |
| SRR7265382 | embryo | 3hA | 3.76 | MC |
| SRR7265383 | embryo | 3hA | 0.97 | MC |
| SRR7265384 | embryo | 3hA | 3.53 | MC |
| SRR7265385 | embryo | 3hN | 2.05 | MC |
| SRR7265386 | embryo | 3hN | 1.64 | MC |
| SRR7265387 | embryo | 3hN | 1.23 | MC |
| SRR7265394 | embryo | 24hA | 4.81 | MC |
| SRR7265396 | embryo | 24hA | 4.03 | MC |
| SRR7265397 | embryo | 24hN | 3.44 | MC |
| SRR2338868 | endosprem | high_temperature | 1.28 | MC |
| SRR976168 | flag_leaf | wild_type | 1.01 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.02 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.64 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.50 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.98 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.21 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.88 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.60 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.13 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.23 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.09 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.81 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.28 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.49 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.33 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.67 | MC |
| SRR1213691 | flower | wt | 3.56 | MC |
| SRR8060835 | leaf | wild_type | 0.76 | MC |
| SRR8060836 | leaf | wild_type | 0.62 | MC |
| SRR8060837 | leaf | wild_type | 1.09 | MC |
| SRR8240824 | leaf | wild_type | 1.68 | MC |
| SRR8240825 | leaf | wild_type | 1.03 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240818 | leaf | wild_type | 0.61 | MC |
| SRR8240819 | leaf | wild_type | 1.09 | MC |
| SRR8240820 | leaf | wild_type | 0.62 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.62 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.03 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.77 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.02 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.30 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.47 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.88 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.15 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.45 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.82 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.11 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.40 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.74 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.44 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.97 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.04 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.76 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.26 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.53 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.78 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.84 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.94 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.78 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.56 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.00 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.76 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.39 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.71 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.18 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.80 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.69 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.53 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.57 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.28 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.69 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.78 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.53 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.26 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.21 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.78 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.53 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.26 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.21 | MC |
| SRR1761528 | leaf | drought | 4.78 | MC |
| SRR1761529 | leaf | drought | 3.53 | MC |
| SRR1761530 | leaf | control | 2.26 | MC |
| SRR1761531 | leaf | control | 1.21 | MC |
| SRR504365 | leaf | wt | 3.21 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.28 | MC |
| SRR6417967 | leaf | H2O_control | 0.87 | MC |
| SRR6417968 | leaf | H2O_control | 0.71 | MC |
| SRR6417969 | leaf | H2O_control | 0.77 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.72 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.40 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.62 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.28 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.18 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.91 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.81 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.22 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.41 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.22 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.78 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.05 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.81 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.92 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.38 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.08 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.37 | MC |
| SRR1213692 | leaf | wt | 2.68 | MC |
| SRR1213693 | leaf | wt | 1.59 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.36 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.12 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502088 | leaf | control | 0.87 | MC |
| SRR6502089 | leaf | control | 0.86 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.79 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.23 | MC |
| SRR6502100 | leaf | control | 0.91 | MC |
| SRR6502102 | leaf | control | 0.92 | MC |
| SRR5856927 | leaf | control | 1.75 | MC |
| SRR5856928 | leaf | control | 1.01 | MC |
| SRR5856929 | leaf | control | 1.48 | MC |
| SRR5856930 | leaf | salt | 0.92 | MC |
| SRR5856931 | leaf | salt | 1.40 | MC |
| SRR5856932 | leaf | salt | 1.45 | MC |
| SRR5856933 | leaf | control | 2.48 | MC |
| SRR5856934 | leaf | control | 1.69 | MC |
| SRR5856935 | leaf | control | 1.70 | MC |
| SRR5856936 | leaf | salt | 1.22 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 8.34 | MC |
| SRR6168974 | leaf | none (control) | 4.67 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.97 | MC |
| SRR8582888 | panicle | AM | 0.49 | MC |
| SRR8582889 | panicle | AM | 0.39 | MC |
| SRR8582890 | panicle | AM | 1.16 | MC |
| SRR8582891 | panicle | PM | 2.04 | MC |
| SRR8582892 | panicle | PM | 1.96 | MC |
| SRR8582893 | panicle | PM | 1.35 | MC |
| SRR4947496 | root | control | 4.64 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.53 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.77 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.48 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.78 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.99 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.26 | MC |
| SRR5126147 | root | "mock,1_day" | 1.81 | MC |
| SRR5126148 | root | "mock,1_day" | 0.95 | MC |
| SRR5126149 | root | "mock,1_day" | 1.33 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.78 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.90 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.45 | MC |
| SRR5126153 | root | "mock,7_days" | 2.58 | MC |
| SRR5126155 | root | "mock,7_days" | 2.60 | MC |
| SRR5126157 | root | "mock,7_days" | 4.51 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.19 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.88 | MC |
| SRR5126165 | root | "mock,14_days" | 3.60 | MC |
| SRR5126167 | root | "mock,14_days" | 3.19 | MC |
| SRR5126169 | root | "mock,14_days" | 3.68 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.75 | MC |
| SRR1213694 | root | wt | 1.71 | MC |
| SRR1213695 | root | wt | 2.57 | MC |
| SRR4947478 | root | control | 4.67 | MC |
| SRR4947480 | root | control | 4.72 | MC |
| SRR4947481 | root | control | 5.31 | MC |
| SRR4947485 | root | Al | 4.75 | MC |
| SRR4947487 | root | control | 3.67 | MC |
| SRR4947488 | root | control | 4.26 | MC |
| SRR4947489 | root | control | 4.21 | MC |
| SRR4947490 | root | Al | 2.86 | MC |
| SRR4947494 | root | control | 4.18 | MC |
| SRR4947500 | root | Al | 4.07 | MC |
| SRR4947504 | root | control | 5.03 | MC |
| SRR4947505 | root | control | 4.44 | MC |
| SRR4947508 | root | Al | 3.16 | MC |
| SRR4947509 | root | Al | 2.36 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502094 | root | control | 0.68 | MC |
| SRR6502095 | root | control | 1.65 | MC |
| SRR6502096 | root | control | 1.57 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.64 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.25 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.52 | MC |
| SRR6502107 | root | control | 1.16 | MC |
| SRR6502108 | root | control | 1.19 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.00 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.89 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.54 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.06 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.54 | MC |
| SRR6441554 | seedling | wild_type | 2.05 | MC |
| SRR6441555 | seedling | wild_type | 1.20 | MC |
| SRR2154086 | seedling | wt | 2.39 | MC |
| SRR2154082 | seedling | wt | 1.81 | MC |
| SRR2154083 | seedling | wt | 3.31 | MC |
| SRR2154084 | seedling | wt | 3.13 | MC |
| SRR2154085 | seedling | wt | 2.73 | MC |
| SRR2154087 | seedling | wt | 3.63 | MC |
| SRR3098741 | seedling | wt | 2.04 | MC |
| SRR3098742 | seedling | wt | 1.00 | MC |
| SRR3098743 | seedling | wt | 1.37 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.94 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.95 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.86 | MC |
| SRR1944583 | seedling | no_treatment | 2.14 | MC |
| SRR358791 | seedling | wt | 2.20 | MC |
| SRR358792 | seedling | wt | 2.77 | MC |
| SRR358794 | seedling | wt | 0.95 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.68 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.52 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.45 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.41 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.03 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.52 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.68 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.19 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.87 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.49 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.70 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.87 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.21 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.13 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.75 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.79 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.73 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.77 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.54 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.55 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.22 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.18 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.06 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.91 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.27 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.27 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.01 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.30 | MC |