| SRR4457249 | 2nd_leaf | DAH4 | 5.62 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.33 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.79 | MC |
| SRR6320473 | carpel | wt | 4.27 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.18 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.48 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.33 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR2338866 | endosprem | control | 4.20 | MC |
| SRR2338867 | endosprem | control | 1.79 | MC |
| SRR4457247 | flag_leaf | DAH44 | 5.17 | MC |
| SRR8060835 | leaf | wild_type | 1.79 | MC |
| SRR8060836 | leaf | wild_type | 2.01 | MC |
| SRR8060837 | leaf | wild_type | 0.90 | MC |
| SRR8240818 | leaf | wild_type | 1.27 | MC |
| SRR8240819 | leaf | wild_type | 2.26 | MC |
| SRR8240820 | leaf | wild_type | 1.59 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.17 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.78 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.71 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.69 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.91 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.98 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.55 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.26 | MC |
| SRR6417967 | leaf | H2O_control | 2.85 | MC |
| SRR6417968 | leaf | H2O_control | 1.58 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.19 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.29 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.81 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.63 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.72 | MC |
| SRR1213692 | leaf | wt | 3.83 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856928 | leaf | control | 0.44 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856932 | leaf | salt | 0.51 | MC |
| SRR5856933 | leaf | control | 0.55 | MC |
| SRR5856935 | leaf | control | 0.53 | MC |
| SRR5856936 | leaf | salt | 0.42 | MC |
| SRR5856937 | leaf | salt | 0.56 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 7.02 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.29 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.16 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.36 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.82 | MC |
| SRR8582888 | panicle | AM | 2.74 | MC |
| SRR8582890 | panicle | AM | 2.40 | MC |
| SRR8582891 | panicle | PM | 5.24 | MC |
| SRR8582892 | panicle | PM | 2.93 | MC |
| SRR8582893 | panicle | PM | 3.56 | MC |
| SRR4947496 | root | control | 2.92 | MC |
| SRR1633182 | panicle | WT | 4.92 | MC |
| SRR5126147 | root | "mock,1_day" | 1.64 | MC |
| SRR5126148 | root | "mock,1_day" | 3.13 | MC |
| SRR5126149 | root | "mock,1_day" | 3.40 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.37 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.22 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.87 | MC |
| SRR5126157 | root | "mock,7_days" | 3.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.50 | MC |
| SRR1213694 | root | wt | 2.88 | MC |
| SRR4947480 | root | control | 2.18 | MC |
| SRR4947481 | root | control | 5.18 | MC |
| SRR4947484 | root | Al | 4.18 | MC |
| SRR4947485 | root | Al | 4.98 | MC |
| SRR4947488 | root | control | 2.22 | MC |
| SRR4947489 | root | control | 4.27 | MC |
| SRR4947492 | root | Al | 2.79 | MC |
| SRR4947493 | root | Al | 3.17 | MC |
| SRR4947497 | root | control | 4.02 | MC |
| SRR4947500 | root | Al | 3.19 | MC |
| SRR4947501 | root | Al | 4.21 | MC |
| SRR4947504 | root | control | 3.34 | MC |
| SRR4947505 | root | control | 3.09 | MC |
| SRR4947508 | root | Al | 3.52 | MC |
| SRR4947509 | root | Al | 4.08 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.79 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.64 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.56 | MC |
| SRR6441554 | seedling | wild_type | 0.40 | MC |
| SRR6441555 | seedling | wild_type | 2.25 | MC |
| SRR2154087 | seedling | wt | 3.33 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.74 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.90 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.82 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.91 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.24 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.68 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.11 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.75 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.74 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.01 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.61 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.16 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.01 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.51 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.67 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.26 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.70 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.55 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.93 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.18 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.22 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.52 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.49 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.40 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.95 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.62 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.38 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.16 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.51 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.88 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.18 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.24 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.00 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.08 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.47 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.59 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.71 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.80 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.06 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.83 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.11 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.21 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.35 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.77 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.44 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.58 | MC |