| SRR4457249 | 2nd_leaf | DAH4 | 1.65 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.26 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.63 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.12 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.79 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.83 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.58 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.64 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.16 | MC |
| SRR6320498 | carpel | wt | 2.77 | MC |
| SRR5560727 | caryopsis | wild_type | 4.00 | MC |
| SRR5560729 | caryopsis | wild_type | 2.28 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.19 | MC |
| SRR7265400 | coleoptile | 2dA | 1.00 | MC |
| SRR7265401 | coleoptile | 2dA | 1.23 | MC |
| SRR7265402 | coleoptile | 2dA | 0.80 | MC |
| SRR7265403 | coleoptile | 2dN | 0.78 | MC |
| SRR7265404 | coleoptile | 2dN | 1.33 | MC |
| SRR7265405 | coleoptile | 2dN | 1.28 | MC |
| SRR7265406 | coleoptile | 3dA | 1.17 | MC |
| SRR7265407 | coleoptile | 3dA | 0.91 | MC |
| SRR7265411 | coleoptile | 3dN | 1.12 | MC |
| SRR7265413 | coleoptile | 4dA | 1.98 | MC |
| SRR7265414 | coleoptile | 4dA | 2.10 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.63 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.41 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.53 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.73 | MC |
| SRR7265376 | embryo | 1hA | 1.00 | MC |
| SRR7265378 | embryo | 1hA | 1.02 | MC |
| SRR7265381 | embryo | 1hN | 1.15 | MC |
| SRR7265388 | embryo | 12hA | 2.04 | MC |
| SRR7265389 | embryo | 12hA | 2.26 | MC |
| SRR7265390 | embryo | 12hA | 1.06 | MC |
| SRR7265391 | embryo | 12hN | 1.58 | MC |
| SRR7265392 | embryo | 12hN | 1.24 | MC |
| SRR7265393 | embryo | 12hN | 1.50 | MC |
| SRR2338869 | endosprem | high_temperature | 1.72 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.71 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.69 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.33 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.55 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.05 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.24 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.05 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.39 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.61 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.07 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.86 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.72 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.53 | MC |
| SRR1213691 | flower | wt | 2.69 | MC |
| SRR8060835 | leaf | wild_type | 0.68 | MC |
| SRR8060836 | leaf | wild_type | 1.01 | MC |
| SRR8060837 | leaf | wild_type | 0.65 | MC |
| SRR8240824 | leaf | wild_type | 0.66 | MC |
| SRR8240825 | leaf | wild_type | 2.12 | MC |
| SRR8240818 | leaf | wild_type | 0.78 | MC |
| SRR8240819 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 1.86 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.27 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.39 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.42 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.76 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.94 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.32 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.08 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.43 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.66 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.31 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.72 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.80 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.74 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.62 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.09 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.32 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.73 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.61 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.15 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.80 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.18 | MC |
| SRR6417967 | leaf | H2O_control | 1.17 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.33 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.81 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.34 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.08 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.13 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.25 | MC |
| SRR1213692 | leaf | wt | 2.14 | MC |
| SRR1213693 | leaf | wt | 2.10 | MC |
| SRR6502088 | leaf | control | 2.78 | MC |
| SRR5856928 | leaf | control | 0.57 | MC |
| SRR5856929 | leaf | control | 0.44 | MC |
| SRR5856933 | leaf | control | 0.29 | MC |
| SRR5856934 | leaf | control | 0.20 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.90 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168979 | leaf | none (control) | 0.29 | MC |
| SRR6168981 | leaf | none (control) | 0.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR8582893 | panicle | PM | 0.48 | MC |
| SRR5110431 | panicle | Dawn | 1.68 | MC |
| SRR5110432 | panicle | Dawn | 1.70 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.22 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.43 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.73 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.19 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.88 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.20 | MC |
| SRR5110445 | panicle | Dusk | 2.93 | MC |
| SRR5110447 | panicle | Dusk | 1.59 | MC |
| SRR5110448 | panicle | Dusk | 3.03 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.53 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.74 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.72 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.19 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.08 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.00 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.19 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.20 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.67 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.44 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.86 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.01 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.67 | MC |
| SRR5126155 | root | "mock,7_days" | 0.87 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.62 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.94 | MC |
| SRR5126165 | root | "mock,14_days" | 0.87 | MC |
| SRR5126167 | root | "mock,14_days" | 1.57 | MC |
| SRR5126169 | root | "mock,14_days" | 0.85 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.90 | MC |
| SRR1213694 | root | wt | 1.26 | MC |
| SRR1213695 | root | wt | 0.81 | MC |
| SRR6441554 | seedling | wild_type | 1.10 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 0.61 | MC |
| SRR2154082 | seedling | wt | 1.39 | MC |
| SRR2154083 | seedling | wt | 2.07 | MC |
| SRR2154084 | seedling | wt | 2.54 | MC |
| SRR2154085 | seedling | wt | 0.75 | MC |
| SRR3098741 | seedling | wt | 1.47 | MC |
| SRR3098742 | seedling | wt | 0.67 | MC |
| SRR3098743 | seedling | wt | 1.03 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.74 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.87 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.07 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.77 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.21 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.00 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.21 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.90 | MC |