| SRR4457256 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR358795 | callus | wt | 1.35 | MC |
| SRR358796 | callus | wt | 1.31 | MC |
| SRR358797 | callus | wt | 1.79 | MC |
| SRR358798 | callus | wt | 1.71 | MC |
| SRR5560727 | caryopsis | wild_type | 0.92 | MC |
| SRR5560728 | caryopsis | wild_type | 0.61 | MC |
| SRR5560729 | caryopsis | wild_type | 0.83 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR4947495 | root | control | 1.20 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR7265400 | coleoptile | 2dA | 0.33 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265406 | coleoptile | 3dA | 0.57 | MC |
| SRR7265407 | coleoptile | 3dA | 0.26 | MC |
| SRR7265408 | coleoptile | 3dA | 0.39 | MC |
| SRR7265409 | coleoptile | 3dN | 0.47 | MC |
| SRR7265410 | coleoptile | 3dN | 0.34 | MC |
| SRR7265413 | coleoptile | 4dA | 0.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.50 | MC |
| SRR7265377 | embryo | 1hA | 0.71 | MC |
| SRR7265380 | embryo | 1hN | 0.39 | MC |
| SRR7265381 | embryo | 1hN | 0.29 | MC |
| SRR7265384 | embryo | 3hA | 0.52 | MC |
| SRR7265386 | embryo | 3hN | 0.31 | MC |
| SRR7265388 | embryo | 12hA | 0.48 | MC |
| SRR7265395 | embryo | 24hA | 0.67 | MC |
| SRR7265396 | embryo | 24hA | 1.03 | MC |
| SRR2338867 | endosprem | control | 0.52 | MC |
| SRR2338869 | endosprem | high_temperature | 0.93 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.62 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.73 | MC |
| SRR8060835 | leaf | wild_type | 0.28 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.85 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.77 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.93 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.09 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.81 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.59 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.87 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.86 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.80 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.07 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.99 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.48 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.62 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.68 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.69 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.99 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.50 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.92 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.94 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.47 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.37 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.56 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.53 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.92 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.56 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.53 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.92 | MC |
| SRR1761528 | leaf | drought | 0.56 | MC |
| SRR1761529 | leaf | drought | 0.53 | MC |
| SRR1761531 | leaf | control | 0.92 | MC |
| SRR504365 | leaf | wt | 1.06 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.98 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.52 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.78 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.77 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.66 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR1213693 | leaf | wt | 0.26 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.00 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502088 | leaf | control | 0.91 | MC |
| SRR6502089 | leaf | control | 0.65 | MC |
| SRR6502090 | leaf | control | 0.86 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.00 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6502100 | leaf | control | 0.73 | MC |
| SRR6502101 | leaf | control | 0.79 | MC |
| SRR6502102 | leaf | control | 0.70 | MC |
| SRR8582888 | panicle | AM | 0.74 | MC |
| SRR8582890 | panicle | AM | 0.27 | MC |
| SRR8582891 | panicle | PM | 0.53 | MC |
| SRR8582892 | panicle | PM | 0.92 | MC |
| SRR8582893 | panicle | PM | 0.83 | MC |
| SRR5110429 | panicle | Dawn | 4.27 | MC |
| SRR5110430 | panicle | Dawn | 3.13 | MC |
| SRR5110431 | panicle | Dawn | 2.99 | MC |
| SRR5110432 | panicle | Dawn | 1.42 | MC |
| SRR4947496 | root | control | 0.51 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.73 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.76 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.57 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.65 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.82 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.84 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.46 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.84 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.05 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.39 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.88 | MC |
| SRR5110445 | panicle | Dusk | 2.37 | MC |
| SRR5110446 | panicle | Dusk | 1.54 | MC |
| SRR5110447 | panicle | Dusk | 1.96 | MC |
| SRR5110448 | panicle | Dusk | 3.22 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.55 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.00 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.46 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.25 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.81 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.75 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.20 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.56 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.52 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.01 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.33 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.11 | MC |
| SRR1633182 | panicle | WT | 3.39 | MC |
| SRR1633185 | panicle | WT | 5.52 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.37 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.76 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.47 | MC |
| SRR5126149 | root | "mock,1_day" | 0.79 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126157 | root | "mock,7_days" | 0.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.69 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.55 | MC |
| SRR5126165 | root | "mock,14_days" | 1.31 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126169 | root | "mock,14_days" | 1.15 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.87 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.07 | MC |
| SRR1213694 | root | wt | 2.24 | MC |
| SRR1213695 | root | wt | 0.34 | MC |
| SRR4947478 | root | control | 0.89 | MC |
| SRR4947479 | root | control | 1.43 | MC |
| SRR4947480 | root | control | 1.25 | MC |
| SRR4947481 | root | control | 1.13 | MC |
| SRR4947482 | root | Al | 0.62 | MC |
| SRR4947483 | root | Al | 1.08 | MC |
| SRR4947484 | root | Al | 0.93 | MC |
| SRR4947485 | root | Al | 1.78 | MC |
| SRR4947487 | root | control | 1.68 | MC |
| SRR4947488 | root | control | 1.07 | MC |
| SRR4947489 | root | control | 2.99 | MC |
| SRR4947490 | root | Al | 0.97 | MC |
| SRR4947491 | root | Al | 1.56 | MC |
| SRR4947492 | root | Al | 0.91 | MC |
| SRR4947493 | root | Al | 0.78 | MC |
| SRR4947494 | root | control | 0.68 | MC |
| SRR4947497 | root | control | 1.47 | MC |
| SRR4947498 | root | Al | 2.37 | MC |
| SRR4947499 | root | Al | 1.27 | MC |
| SRR4947500 | root | Al | 1.54 | MC |
| SRR4947501 | root | Al | 1.21 | MC |
| SRR4947502 | root | control | 1.17 | MC |
| SRR4947503 | root | control | 3.37 | MC |
| SRR4947504 | root | control | 1.11 | MC |
| SRR4947505 | root | control | 1.49 | MC |
| SRR4947506 | root | Al | 0.89 | MC |
| SRR4947507 | root | Al | 2.06 | MC |
| SRR4947508 | root | Al | 0.82 | MC |
| SRR4947509 | root | Al | 0.79 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.81 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.67 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.56 | MC |
| SRR6502094 | root | control | 4.09 | MC |
| SRR6502095 | root | control | 1.94 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.15 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.33 | MC |
| SRR6502106 | root | control | 1.81 | MC |
| SRR6502107 | root | control | 1.54 | MC |
| SRR6502108 | root | control | 1.76 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.89 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.25 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.98 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.88 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.83 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.19 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.39 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.59 | MC |
| SRR2154086 | seedling | wt | 0.80 | MC |
| SRR2154084 | seedling | wt | 0.31 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR1944583 | seedling | no_treatment | 0.71 | MC |
| SRR358791 | seedling | wt | 1.01 | MC |
| SRR358792 | seedling | wt | 1.26 | MC |
| SRR358793 | seedling | wt | 0.91 | MC |
| SRR358794 | seedling | wt | 1.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.31 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.96 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.23 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.43 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.49 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.73 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.97 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.99 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.16 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.69 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.99 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.78 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.64 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.03 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.03 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.96 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.95 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.64 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.50 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.07 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.80 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.72 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.32 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.60 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.12 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.31 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.08 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.77 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.19 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.27 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.40 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.67 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.83 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.44 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.54 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.27 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.92 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.35 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.55 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.66 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |