| SRR358795 | callus | wt | 4.57 | MC |
| SRR358796 | callus | wt | 8.00 | MC |
| SRR358797 | callus | wt | 6.21 | MC |
| SRR358798 | callus | wt | 4.89 | MC |
| SRR5560727 | caryopsis | wild_type | 0.58 | MC |
| SRR5560729 | caryopsis | wild_type | 0.73 | MC |
| SRR7265400 | coleoptile | 2dA | 0.32 | MC |
| SRR7265401 | coleoptile | 2dA | 0.72 | MC |
| SRR7265402 | coleoptile | 2dA | 0.71 | MC |
| SRR7265404 | coleoptile | 2dN | 0.53 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.39 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.83 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.26 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.98 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.28 | MC |
| SRR7265376 | embryo | 1hA | 2.84 | MC |
| SRR7265379 | embryo | 1hN | 0.93 | MC |
| SRR7265380 | embryo | 1hN | 0.87 | MC |
| SRR7265381 | embryo | 1hN | 1.00 | MC |
| SRR7265388 | embryo | 12hA | 0.98 | MC |
| SRR7265389 | embryo | 12hA | 1.58 | MC |
| SRR7265390 | embryo | 12hA | 1.40 | MC |
| SRR7265391 | embryo | 12hN | 2.36 | MC |
| SRR7265392 | embryo | 12hN | 1.62 | MC |
| SRR7265393 | embryo | 12hN | 2.32 | MC |
| SRR7265398 | embryo | 24hN | 0.78 | MC |
| SRR7265399 | embryo | 24hN | 1.22 | MC |
| SRR2338869 | endosprem | high_temperature | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.64 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.28 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.96 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.46 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.45 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.28 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.40 | MC |
| SRR6417967 | leaf | H2O_control | 0.96 | MC |
| SRR6417968 | leaf | H2O_control | 0.84 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.72 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.26 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.38 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.85 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.88 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.49 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.75 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.29 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.06 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6168973 | leaf | none (control) | 0.87 | MC |
| SRR6168974 | leaf | none (control) | 3.68 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR4947496 | root | control | 2.17 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.36 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.78 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.55 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.85 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.35 | MC |
| SRR5126147 | root | "mock,1_day" | 2.76 | MC |
| SRR5126148 | root | "mock,1_day" | 2.89 | MC |
| SRR5126149 | root | "mock,1_day" | 0.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.71 | MC |
| SRR5126153 | root | "mock,7_days" | 0.75 | MC |
| SRR5126155 | root | "mock,7_days" | 0.72 | MC |
| SRR5126157 | root | "mock,7_days" | 3.35 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126165 | root | "mock,14_days" | 3.11 | MC |
| SRR5126167 | root | "mock,14_days" | 1.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.42 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 0.28 | MC |
| SRR4947480 | root | control | 3.47 | MC |
| SRR4947481 | root | control | 2.94 | MC |
| SRR4947484 | root | Al | 1.22 | MC |
| SRR4947485 | root | Al | 2.13 | MC |
| SRR4947488 | root | control | 2.71 | MC |
| SRR4947489 | root | control | 0.80 | MC |
| SRR4947492 | root | Al | 2.68 | MC |
| SRR4947493 | root | Al | 1.24 | MC |
| SRR4947497 | root | control | 1.01 | MC |
| SRR4947500 | root | Al | 1.64 | MC |
| SRR4947504 | root | control | 2.79 | MC |
| SRR4947505 | root | control | 3.51 | MC |
| SRR4947508 | root | Al | 1.81 | MC |
| SRR4947509 | root | Al | 2.96 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.72 | MC |
| SRR6502094 | root | control | 0.53 | MC |
| SRR6502095 | root | control | 0.59 | MC |
| SRR6502096 | root | control | 0.86 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502106 | root | control | 0.62 | MC |
| SRR6502107 | root | control | 1.07 | MC |
| SRR6502108 | root | control | 0.95 | MC |
| SRR2154086 | seedling | wt | 1.17 | MC |
| SRR2154085 | seedling | wt | 0.54 | MC |
| SRR2154087 | seedling | wt | 2.13 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.41 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.68 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.68 | MC |
| SRR358791 | seedling | wt | 0.96 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.27 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.29 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.91 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.23 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.26 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.27 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.84 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.91 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.42 | MC |