| SRR4457250 | 2nd_leaf | DAH4 | 0.69 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.33 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.33 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.84 | MC |
| SRR3745125 | anther | wt | 1.32 | MC |
| SRR3745126 | anther | wt | 1.88 | MC |
| SRR3745127 | anther | wt | 1.12 | MC |
| SRR358795 | callus | wt | 2.30 | MC |
| SRR358796 | callus | wt | 3.70 | MC |
| SRR358797 | callus | wt | 1.92 | MC |
| SRR358798 | callus | wt | 2.07 | MC |
| SRR5560727 | caryopsis | wild_type | 1.09 | MC |
| SRR5560728 | caryopsis | wild_type | 0.46 | MC |
| SRR5560729 | caryopsis | wild_type | 1.13 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.60 | MC |
| SRR4947495 | root | control | 0.53 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.74 | MC |
| SRR7265400 | coleoptile | 2dA | 1.19 | MC |
| SRR7265401 | coleoptile | 2dA | 1.16 | MC |
| SRR7265402 | coleoptile | 2dA | 0.70 | MC |
| SRR7265403 | coleoptile | 2dN | 0.95 | MC |
| SRR7265404 | coleoptile | 2dN | 1.61 | MC |
| SRR7265405 | coleoptile | 2dN | 1.65 | MC |
| SRR7265406 | coleoptile | 3dA | 0.56 | MC |
| SRR7265407 | coleoptile | 3dA | 0.48 | MC |
| SRR7265408 | coleoptile | 3dA | 0.46 | MC |
| SRR7265409 | coleoptile | 3dN | 1.41 | MC |
| SRR7265410 | coleoptile | 3dN | 1.29 | MC |
| SRR7265411 | coleoptile | 3dN | 1.19 | MC |
| SRR7265412 | coleoptile | 4dA | 0.54 | MC |
| SRR7265413 | coleoptile | 4dA | 0.68 | MC |
| SRR7265414 | coleoptile | 4dA | 1.13 | MC |
| SRR7265415 | coleoptile | 4dN | 1.28 | MC |
| SRR7265416 | coleoptile | 4dN | 0.97 | MC |
| SRR7265417 | coleoptile | 4dN | 1.20 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.27 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.75 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.91 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.71 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265376 | embryo | 1hA | 1.06 | MC |
| SRR7265377 | embryo | 1hA | 0.82 | MC |
| SRR7265378 | embryo | 1hA | 0.49 | MC |
| SRR7265379 | embryo | 1hN | 1.33 | MC |
| SRR7265380 | embryo | 1hN | 1.16 | MC |
| SRR7265381 | embryo | 1hN | 0.84 | MC |
| SRR7265382 | embryo | 3hA | 0.44 | MC |
| SRR7265383 | embryo | 3hA | 0.72 | MC |
| SRR7265384 | embryo | 3hA | 0.43 | MC |
| SRR7265385 | embryo | 3hN | 0.51 | MC |
| SRR7265387 | embryo | 3hN | 0.58 | MC |
| SRR7265388 | embryo | 12hA | 1.33 | MC |
| SRR7265389 | embryo | 12hA | 1.51 | MC |
| SRR7265390 | embryo | 12hA | 2.47 | MC |
| SRR7265391 | embryo | 12hN | 1.13 | MC |
| SRR7265392 | embryo | 12hN | 1.73 | MC |
| SRR7265393 | embryo | 12hN | 1.55 | MC |
| SRR7265395 | embryo | 24hA | 1.43 | MC |
| SRR7265396 | embryo | 24hA | 1.39 | MC |
| SRR7265397 | embryo | 24hN | 1.60 | MC |
| SRR7265398 | embryo | 24hN | 1.23 | MC |
| SRR7265399 | embryo | 24hN | 1.51 | MC |
| SRR2338867 | endosprem | control | 0.61 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.54 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.22 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.35 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.11 | MC |
| SRR1213691 | flower | wt | 1.19 | MC |
| SRR8060835 | leaf | wild_type | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.50 | MC |
| SRR8060837 | leaf | wild_type | 0.33 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.37 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.31 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.40 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.59 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR504365 | leaf | wt | 0.32 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.48 | MC |
| SRR6417967 | leaf | H2O_control | 0.57 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR1213693 | leaf | wt | 0.22 | MC |
| SRR5856928 | leaf | control | 0.28 | MC |
| SRR5856930 | leaf | salt | 0.21 | MC |
| SRR5856933 | leaf | control | 0.25 | MC |
| SRR5856936 | leaf | salt | 0.20 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.83 | MC |
| SRR6168973 | leaf | none (control) | 0.41 | MC |
| SRR6168974 | leaf | none (control) | 0.29 | MC |
| SRR6168975 | leaf | none (control) | 0.47 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR8582893 | panicle | PM | 0.54 | MC |
| SRR5110431 | panicle | Dawn | 0.36 | MC |
| SRR5110432 | panicle | Dawn | 0.72 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.79 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.29 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.26 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.06 | MC |
| SRR5110445 | panicle | Dusk | 0.89 | MC |
| SRR5110446 | panicle | Dusk | 1.11 | MC |
| SRR5110447 | panicle | Dusk | 0.76 | MC |
| SRR5110448 | panicle | Dusk | 0.70 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.55 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.76 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.58 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR1633182 | panicle | WT | 1.03 | MC |
| SRR1633185 | panicle | WT | 2.59 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.53 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.09 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.69 | MC |
| SRR5126147 | root | "mock,1_day" | 0.81 | MC |
| SRR5126148 | root | "mock,1_day" | 0.98 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.08 | MC |
| SRR5126153 | root | "mock,7_days" | 0.81 | MC |
| SRR5126155 | root | "mock,7_days" | 1.20 | MC |
| SRR5126157 | root | "mock,7_days" | 0.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.16 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.37 | MC |
| SRR5126165 | root | "mock,14_days" | 1.05 | MC |
| SRR5126167 | root | "mock,14_days" | 0.74 | MC |
| SRR5126169 | root | "mock,14_days" | 0.95 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.80 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.27 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.65 | MC |
| SRR1213694 | root | wt | 0.64 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR4947483 | root | Al | 0.52 | MC |
| SRR4947492 | root | Al | 1.24 | MC |
| SRR4947493 | root | Al | 0.74 | MC |
| SRR4947498 | root | Al | 0.62 | MC |
| SRR4947500 | root | Al | 0.69 | MC |
| SRR4947501 | root | Al | 0.91 | MC |
| SRR4947505 | root | control | 0.70 | MC |
| SRR4947507 | root | Al | 1.19 | MC |
| SRR4947508 | root | Al | 0.65 | MC |
| SRR4947509 | root | Al | 0.88 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502106 | root | control | 0.45 | MC |
| SRR6502107 | root | control | 0.63 | MC |
| SRR6502108 | root | control | 0.48 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.41 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.28 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.89 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.55 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.39 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.14 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.76 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.22 | MC |
| SRR6441555 | seedling | wild_type | 0.38 | MC |
| SRR2154082 | seedling | wt | 0.76 | MC |
| SRR2154083 | seedling | wt | 0.52 | MC |
| SRR2154084 | seedling | wt | 0.34 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.50 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.78 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.84 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.53 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.79 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.76 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.03 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.15 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.32 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.10 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.00 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.85 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.64 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.81 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.59 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.01 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.75 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.21 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.01 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.17 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.41 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.29 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.75 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.72 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.33 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.50 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.50 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.21 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.76 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.42 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.43 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.13 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.87 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.06 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.19 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.55 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.41 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.41 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.62 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.72 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.14 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.19 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.80 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |