| SRR4457252 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR358796 | callus | wt | 8.76 | MC |
| SRR358797 | callus | wt | 6.13 | MC |
| SRR358798 | callus | wt | 7.88 | MC |
| SRR6320473 | carpel | wt | 2.66 | MC |
| SRR5560727 | caryopsis | wild_type | 0.62 | MC |
| SRR5560729 | caryopsis | wild_type | 1.06 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.53 | MC |
| SRR7265402 | coleoptile | 2dA | 0.61 | MC |
| SRR7265405 | coleoptile | 2dN | 0.54 | MC |
| SRR7265413 | coleoptile | 4dA | 0.56 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.63 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.76 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.51 | MC |
| SRR7265376 | embryo | 1hA | 1.33 | MC |
| SRR7265377 | embryo | 1hA | 1.67 | MC |
| SRR7265378 | embryo | 1hA | 1.00 | MC |
| SRR7265379 | embryo | 1hN | 0.70 | MC |
| SRR7265381 | embryo | 1hN | 0.64 | MC |
| SRR7265385 | embryo | 3hN | 3.32 | MC |
| SRR7265386 | embryo | 3hN | 2.21 | MC |
| SRR7265387 | embryo | 3hN | 2.70 | MC |
| SRR7265388 | embryo | 12hA | 0.52 | MC |
| SRR7265389 | embryo | 12hA | 0.89 | MC |
| SRR7265391 | embryo | 12hN | 1.46 | MC |
| SRR7265392 | embryo | 12hN | 1.49 | MC |
| SRR7265393 | embryo | 12hN | 1.53 | MC |
| SRR7265398 | embryo | 24hN | 0.46 | MC |
| SRR7265399 | embryo | 24hN | 0.64 | MC |
| SRR2338867 | endosprem | control | 0.72 | MC |
| SRR2338868 | endosprem | high_temperature | 1.15 | MC |
| SRR2338869 | endosprem | high_temperature | 1.04 | MC |
| SRR976168 | flag_leaf | wild_type | 2.78 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.35 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.23 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.80 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.93 | MC |
| SRR1213691 | flower | wt | 0.50 | MC |
| SRR8240824 | leaf | wild_type | 0.95 | MC |
| SRR8240825 | leaf | wild_type | 2.03 | MC |
| SRR8240818 | leaf | wild_type | 0.45 | MC |
| SRR8240819 | leaf | wild_type | 1.66 | MC |
| SRR8240820 | leaf | wild_type | 1.79 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.00 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.33 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.56 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.52 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.30 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.20 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.25 | MC |
| SRR504365 | leaf | wt | 0.28 | MC |
| SRR6417967 | leaf | H2O_control | 2.84 | MC |
| SRR6417968 | leaf | H2O_control | 3.16 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.37 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.56 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.21 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.61 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.30 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.16 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.90 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.09 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR1213692 | leaf | wt | 0.82 | MC |
| SRR1213693 | leaf | wt | 0.64 | MC |
| SRR6502088 | leaf | control | 0.57 | MC |
| SRR6502089 | leaf | control | 1.07 | MC |
| SRR6502090 | leaf | control | 0.37 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.73 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.30 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.54 | MC |
| SRR6502101 | leaf | control | 0.96 | MC |
| SRR6502102 | leaf | control | 0.66 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.27 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.01 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.94 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.83 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR8582890 | panicle | AM | 0.30 | MC |
| SRR8582891 | panicle | PM | 0.78 | MC |
| SRR8582893 | panicle | PM | 0.91 | MC |
| SRR4947496 | root | control | 4.43 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.51 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.67 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.48 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.04 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.87 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.62 | MC |
| SRR5110447 | panicle | Dusk | 0.91 | MC |
| SRR5110448 | panicle | Dusk | 1.49 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.88 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.94 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.43 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.41 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.04 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.86 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.34 | MC |
| SRR5126149 | root | "mock,1_day" | 1.16 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.21 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.86 | MC |
| SRR5126153 | root | "mock,7_days" | 0.40 | MC |
| SRR5126155 | root | "mock,7_days" | 1.57 | MC |
| SRR5126157 | root | "mock,7_days" | 3.06 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.33 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.89 | MC |
| SRR5126165 | root | "mock,14_days" | 1.80 | MC |
| SRR5126167 | root | "mock,14_days" | 2.55 | MC |
| SRR5126169 | root | "mock,14_days" | 0.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.65 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.24 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.01 | MC |
| SRR1213694 | root | wt | 0.38 | MC |
| SRR1213695 | root | wt | 1.08 | MC |
| SRR4947480 | root | control | 4.18 | MC |
| SRR4947488 | root | control | 3.72 | MC |
| SRR4947492 | root | Al | 4.77 | MC |
| SRR4947493 | root | Al | 2.64 | MC |
| SRR4947497 | root | control | 2.01 | MC |
| SRR4947500 | root | Al | 3.35 | MC |
| SRR4947501 | root | Al | 1.32 | MC |
| SRR4947505 | root | control | 4.71 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.14 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.12 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.67 | MC |
| SRR6502094 | root | control | 1.13 | MC |
| SRR6502095 | root | control | 1.67 | MC |
| SRR6502096 | root | control | 2.25 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502106 | root | control | 0.86 | MC |
| SRR6502107 | root | control | 1.74 | MC |
| SRR6502108 | root | control | 1.28 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.25 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.50 | MC |
| SRR2154086 | seedling | wt | 2.50 | MC |
| SRR2154084 | seedling | wt | 1.85 | MC |
| SRR2154085 | seedling | wt | 1.91 | MC |
| SRR2154087 | seedling | wt | 3.09 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098743 | seedling | wt | 0.38 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.05 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.87 | MC |
| SRR1944583 | seedling | no_treatment | 0.51 | MC |
| SRR358791 | seedling | wt | 2.11 | MC |
| SRR358792 | seedling | wt | 1.63 | MC |
| SRR358794 | seedling | wt | 0.87 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.68 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.84 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.32 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.95 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.08 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.96 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.39 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.83 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.81 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.07 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.58 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.13 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.87 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.68 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.35 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.77 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.16 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.85 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.07 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.30 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.71 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.11 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.30 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.31 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |