| SRR3745125 | anther | wt | 1.80 | MC |
| SRR3745126 | anther | wt | 2.92 | MC |
| SRR3745127 | anther | wt | 0.98 | MC |
| SRR358795 | callus | wt | 2.51 | MC |
| SRR358796 | callus | wt | 2.01 | MC |
| SRR358797 | callus | wt | 3.03 | MC |
| SRR358798 | callus | wt | 2.19 | MC |
| SRR4947495 | root | control | 1.12 | MC |
| SRR7265400 | coleoptile | 2dA | 3.02 | MC |
| SRR7265401 | coleoptile | 2dA | 2.63 | MC |
| SRR7265402 | coleoptile | 2dA | 2.98 | MC |
| SRR7265403 | coleoptile | 2dN | 2.40 | MC |
| SRR7265404 | coleoptile | 2dN | 2.16 | MC |
| SRR7265405 | coleoptile | 2dN | 3.11 | MC |
| SRR7265409 | coleoptile | 3dN | 4.02 | MC |
| SRR7265411 | coleoptile | 3dN | 2.93 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.17 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.94 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.22 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.51 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.75 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.35 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.83 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.42 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.74 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.37 | MC |
| SRR7265376 | embryo | 1hA | 1.20 | MC |
| SRR7265377 | embryo | 1hA | 1.58 | MC |
| SRR7265378 | embryo | 1hA | 1.58 | MC |
| SRR7265379 | embryo | 1hN | 1.56 | MC |
| SRR7265380 | embryo | 1hN | 1.54 | MC |
| SRR7265381 | embryo | 1hN | 1.38 | MC |
| SRR7265382 | embryo | 3hA | 1.70 | MC |
| SRR7265383 | embryo | 3hA | 1.57 | MC |
| SRR7265384 | embryo | 3hA | 1.58 | MC |
| SRR7265385 | embryo | 3hN | 1.27 | MC |
| SRR7265386 | embryo | 3hN | 1.13 | MC |
| SRR7265387 | embryo | 3hN | 0.86 | MC |
| SRR7265391 | embryo | 12hN | 4.81 | MC |
| SRR7265393 | embryo | 12hN | 4.54 | MC |
| SRR7265395 | embryo | 24hA | 3.84 | MC |
| SRR7265397 | embryo | 24hN | 3.62 | MC |
| SRR7265398 | embryo | 24hN | 2.72 | MC |
| SRR7265399 | embryo | 24hN | 3.19 | MC |
| SRR2338866 | endosprem | control | 1.90 | MC |
| SRR2338867 | endosprem | control | 1.92 | MC |
| SRR8060835 | leaf | wild_type | 0.76 | MC |
| SRR8060836 | leaf | wild_type | 2.56 | MC |
| SRR8060837 | leaf | wild_type | 1.02 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.07 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.27 | MC |
| SRR6502088 | leaf | control | 1.73 | MC |
| SRR6502089 | leaf | control | 2.86 | MC |
| SRR6502090 | leaf | control | 3.84 | MC |
| SRR5856927 | leaf | control | 0.64 | MC |
| SRR5856928 | leaf | control | 0.65 | MC |
| SRR5856929 | leaf | control | 0.86 | MC |
| SRR5856930 | leaf | salt | 0.78 | MC |
| SRR5856931 | leaf | salt | 0.54 | MC |
| SRR5856932 | leaf | salt | 0.55 | MC |
| SRR5856933 | leaf | control | 0.61 | MC |
| SRR5856934 | leaf | control | 0.68 | MC |
| SRR5856935 | leaf | control | 0.66 | MC |
| SRR5856936 | leaf | salt | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.58 | MC |
| SRR5856938 | leaf | salt | 0.65 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.14 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.73 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.35 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.62 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.25 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.39 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.36 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.49 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.08 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.64 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.58 | MC |
| SRR6168979 | leaf | none (control) | 1.31 | MC |
| SRR6168980 | leaf | none (control) | 0.48 | MC |
| SRR6168981 | leaf | none (control) | 1.17 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR5110429 | panicle | Dawn | 1.54 | MC |
| SRR5110430 | panicle | Dawn | 2.34 | MC |
| SRR5110431 | panicle | Dawn | 1.74 | MC |
| SRR5110432 | panicle | Dawn | 1.71 | MC |
| SRR4947496 | root | control | 0.96 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.01 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.35 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.22 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.57 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.35 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.64 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.29 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.66 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.36 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.74 | MC |
| SRR5110445 | panicle | Dusk | 3.70 | MC |
| SRR5110446 | panicle | Dusk | 2.95 | MC |
| SRR5110447 | panicle | Dusk | 3.54 | MC |
| SRR5110448 | panicle | Dusk | 2.74 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.69 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.42 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.31 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.59 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.42 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.88 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.58 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.69 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.69 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.86 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.77 | MC |
| SRR1633182 | panicle | WT | 2.22 | MC |
| SRR1633185 | panicle | WT | 2.84 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.95 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.87 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.58 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.68 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.31 | MC |
| SRR5126147 | root | "mock,1_day" | 2.84 | MC |
| SRR5126148 | root | "mock,1_day" | 3.24 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.24 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.78 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.91 | MC |
| SRR5126153 | root | "mock,7_days" | 1.80 | MC |
| SRR5126155 | root | "mock,7_days" | 3.47 | MC |
| SRR5126157 | root | "mock,7_days" | 3.08 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.75 | MC |
| SRR5126165 | root | "mock,14_days" | 2.94 | MC |
| SRR5126167 | root | "mock,14_days" | 2.68 | MC |
| SRR5126169 | root | "mock,14_days" | 3.59 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.86 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.83 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.72 | MC |
| SRR1213694 | root | wt | 1.83 | MC |
| SRR4947479 | root | control | 1.50 | MC |
| SRR4947480 | root | control | 0.83 | MC |
| SRR4947481 | root | control | 1.84 | MC |
| SRR4947482 | root | Al | 0.59 | MC |
| SRR4947483 | root | Al | 0.95 | MC |
| SRR4947484 | root | Al | 0.80 | MC |
| SRR4947485 | root | Al | 0.94 | MC |
| SRR4947487 | root | control | 0.66 | MC |
| SRR4947488 | root | control | 1.15 | MC |
| SRR4947489 | root | control | 1.19 | MC |
| SRR4947490 | root | Al | 0.75 | MC |
| SRR4947491 | root | Al | 1.30 | MC |
| SRR4947492 | root | Al | 1.46 | MC |
| SRR4947493 | root | Al | 1.33 | MC |
| SRR4947494 | root | control | 1.22 | MC |
| SRR4947497 | root | control | 1.78 | MC |
| SRR4947498 | root | Al | 1.71 | MC |
| SRR4947499 | root | Al | 1.25 | MC |
| SRR4947500 | root | Al | 1.24 | MC |
| SRR4947501 | root | Al | 2.32 | MC |
| SRR4947502 | root | control | 1.38 | MC |
| SRR4947503 | root | control | 1.38 | MC |
| SRR4947504 | root | control | 1.05 | MC |
| SRR4947505 | root | control | 1.12 | MC |
| SRR4947506 | root | Al | 0.49 | MC |
| SRR4947507 | root | Al | 1.81 | MC |
| SRR4947508 | root | Al | 1.12 | MC |
| SRR4947509 | root | Al | 1.12 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.25 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.48 | MC |
| SRR6502094 | root | control | 1.44 | MC |
| SRR6502095 | root | control | 0.93 | MC |
| SRR6502096 | root | control | 0.86 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.83 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.64 | MC |
| SRR6502106 | root | control | 1.05 | MC |
| SRR6502107 | root | control | 1.19 | MC |
| SRR6502108 | root | control | 1.30 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.35 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.54 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.04 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.19 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.39 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.54 | MC |
| SRR2154082 | seedling | wt | 2.31 | MC |
| SRR2154083 | seedling | wt | 2.04 | MC |
| SRR2154084 | seedling | wt | 1.91 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.19 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.45 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.74 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.36 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.34 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.43 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.98 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.34 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.17 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.56 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.23 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.46 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.81 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.79 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.14 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.94 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.94 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.40 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.71 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.35 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.15 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.93 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.57 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 11.68 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.24 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.71 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.63 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.86 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.02 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.55 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.79 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.03 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.85 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.88 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.60 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.49 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.96 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.91 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.06 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.15 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.50 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.37 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.61 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.08 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.50 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.10 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.42 | MC |