| SRR4457250 | 2nd_leaf | DAH4 | 0.57 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.80 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.13 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.82 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.77 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.76 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.63 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.57 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.91 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.57 | MC |
| SRR358795 | callus | wt | 4.38 | MC |
| SRR358796 | callus | wt | 6.14 | MC |
| SRR358798 | callus | wt | 4.64 | MC |
| SRR5560727 | caryopsis | wild_type | 2.13 | MC |
| SRR5560728 | caryopsis | wild_type | 2.72 | MC |
| SRR5560729 | caryopsis | wild_type | 3.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.14 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.24 | MC |
| SRR7265400 | coleoptile | 2dA | 1.16 | MC |
| SRR7265401 | coleoptile | 2dA | 0.91 | MC |
| SRR7265402 | coleoptile | 2dA | 0.77 | MC |
| SRR7265403 | coleoptile | 2dN | 0.54 | MC |
| SRR7265404 | coleoptile | 2dN | 0.71 | MC |
| SRR7265405 | coleoptile | 2dN | 0.92 | MC |
| SRR7265406 | coleoptile | 3dA | 0.58 | MC |
| SRR7265407 | coleoptile | 3dA | 0.78 | MC |
| SRR7265408 | coleoptile | 3dA | 0.53 | MC |
| SRR7265411 | coleoptile | 3dN | 0.44 | MC |
| SRR7265413 | coleoptile | 4dA | 0.59 | MC |
| SRR7265417 | coleoptile | 4dN | 0.97 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.97 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.14 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.25 | MC |
| SRR7265388 | embryo | 12hA | 2.31 | MC |
| SRR7265389 | embryo | 12hA | 1.64 | MC |
| SRR7265390 | embryo | 12hA | 2.14 | MC |
| SRR7265391 | embryo | 12hN | 0.86 | MC |
| SRR7265392 | embryo | 12hN | 1.32 | MC |
| SRR7265393 | embryo | 12hN | 0.96 | MC |
| SRR7265394 | embryo | 24hA | 0.86 | MC |
| SRR7265395 | embryo | 24hA | 1.38 | MC |
| SRR7265396 | embryo | 24hA | 1.29 | MC |
| SRR7265397 | embryo | 24hN | 0.95 | MC |
| SRR7265399 | embryo | 24hN | 0.65 | MC |
| SRR2338867 | endosprem | control | 0.94 | MC |
| SRR2338869 | endosprem | high_temperature | 0.76 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.46 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.58 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.46 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.60 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.50 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.22 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.87 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.43 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.48 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.05 | MC |
| SRR1213691 | flower | wt | 0.84 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060836 | leaf | wild_type | 0.54 | MC |
| SRR8060837 | leaf | wild_type | 0.25 | MC |
| SRR8240825 | leaf | wild_type | 0.62 | MC |
| SRR8240826 | leaf | wild_type | 0.80 | MC |
| SRR8240818 | leaf | wild_type | 0.66 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR8240820 | leaf | wild_type | 0.54 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.11 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.76 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.31 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.43 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.59 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.81 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.85 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.65 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.99 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.37 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.61 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.17 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.90 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.65 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.62 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.60 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.79 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.60 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.79 | MC |
| SRR1761530 | leaf | control | 0.60 | MC |
| SRR1761531 | leaf | control | 0.79 | MC |
| SRR504365 | leaf | wt | 0.46 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.60 | MC |
| SRR6417968 | leaf | H2O_control | 0.38 | MC |
| SRR6417969 | leaf | H2O_control | 1.06 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.65 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.64 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.63 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.07 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.10 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.60 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.46 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.91 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.62 | MC |
| SRR1213693 | leaf | wt | 0.27 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.35 | MC |
| SRR6502102 | leaf | control | 0.55 | MC |
| SRR5856927 | leaf | control | 0.24 | MC |
| SRR5856929 | leaf | control | 0.36 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856935 | leaf | control | 0.34 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR8582890 | panicle | AM | 0.18 | MC |
| SRR8582893 | panicle | PM | 0.29 | MC |
| SRR5110430 | panicle | Dawn | 1.16 | MC |
| SRR5110431 | panicle | Dawn | 0.91 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.34 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.58 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.45 | MC |
| SRR5110445 | panicle | Dusk | 0.71 | MC |
| SRR5110446 | panicle | Dusk | 0.83 | MC |
| SRR5110447 | panicle | Dusk | 0.92 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.05 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.31 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 2.40 | MC |
| SRR5126148 | root | "mock,1_day" | 1.90 | MC |
| SRR5126149 | root | "mock,1_day" | 3.85 | MC |
| SRR5126153 | root | "mock,7_days" | 2.12 | MC |
| SRR5126155 | root | "mock,7_days" | 2.46 | MC |
| SRR5126157 | root | "mock,7_days" | 0.84 | MC |
| SRR5126165 | root | "mock,14_days" | 2.28 | MC |
| SRR5126167 | root | "mock,14_days" | 1.39 | MC |
| SRR5126169 | root | "mock,14_days" | 2.12 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.25 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.96 | MC |
| SRR1213694 | root | wt | 1.50 | MC |
| SRR1213695 | root | wt | 0.27 | MC |
| SRR4947499 | root | Al | 0.66 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502095 | root | control | 0.63 | MC |
| SRR6502096 | root | control | 0.72 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502106 | root | control | 0.41 | MC |
| SRR6502107 | root | control | 0.57 | MC |
| SRR6502108 | root | control | 1.11 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.69 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.44 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.22 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.97 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.10 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.53 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.28 | MC |
| SRR6441554 | seedling | wild_type | 0.62 | MC |
| SRR2154086 | seedling | wt | 1.94 | MC |
| SRR2154082 | seedling | wt | 1.04 | MC |
| SRR2154083 | seedling | wt | 0.44 | MC |
| SRR2154085 | seedling | wt | 1.79 | MC |
| SRR2154087 | seedling | wt | 1.52 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.40 | MC |
| SRR3098743 | seedling | wt | 0.24 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.65 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.98 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.64 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.14 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.47 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.80 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.19 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.68 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.30 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.16 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.50 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.62 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.22 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.48 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.03 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.37 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.22 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.23 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.06 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.87 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.32 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.14 | MC |