| SRR3745127 | anther | wt | 1.77 | MC |
| SRR358796 | callus | wt | 1.94 | MC |
| SRR358798 | callus | wt | 2.45 | MC |
| SRR6320498 | carpel | wt | 1.67 | MC |
| SRR5560727 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 0.48 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR7265400 | coleoptile | 2dA | 0.92 | MC |
| SRR7265401 | coleoptile | 2dA | 0.68 | MC |
| SRR7265402 | coleoptile | 2dA | 0.63 | MC |
| SRR7265403 | coleoptile | 2dN | 2.26 | MC |
| SRR7265404 | coleoptile | 2dN | 1.47 | MC |
| SRR7265405 | coleoptile | 2dN | 1.59 | MC |
| SRR7265408 | coleoptile | 3dA | 0.55 | MC |
| SRR7265409 | coleoptile | 3dN | 0.99 | MC |
| SRR7265410 | coleoptile | 3dN | 1.25 | MC |
| SRR7265411 | coleoptile | 3dN | 1.02 | MC |
| SRR7265413 | coleoptile | 4dA | 0.57 | MC |
| SRR7265415 | coleoptile | 4dN | 1.03 | MC |
| SRR7265416 | coleoptile | 4dN | 1.45 | MC |
| SRR7265417 | coleoptile | 4dN | 1.15 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.75 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.81 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.21 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.28 | MC |
| SRR7265376 | embryo | 1hA | 0.75 | MC |
| SRR7265377 | embryo | 1hA | 0.76 | MC |
| SRR7265378 | embryo | 1hA | 0.37 | MC |
| SRR7265379 | embryo | 1hN | 0.70 | MC |
| SRR7265380 | embryo | 1hN | 0.64 | MC |
| SRR7265381 | embryo | 1hN | 0.87 | MC |
| SRR7265382 | embryo | 3hA | 0.46 | MC |
| SRR7265383 | embryo | 3hA | 0.86 | MC |
| SRR7265384 | embryo | 3hA | 0.33 | MC |
| SRR7265385 | embryo | 3hN | 0.83 | MC |
| SRR7265386 | embryo | 3hN | 0.89 | MC |
| SRR7265387 | embryo | 3hN | 0.72 | MC |
| SRR7265388 | embryo | 12hA | 4.11 | MC |
| SRR7265389 | embryo | 12hA | 3.63 | MC |
| SRR7265390 | embryo | 12hA | 3.31 | MC |
| SRR7265391 | embryo | 12hN | 3.58 | MC |
| SRR7265392 | embryo | 12hN | 3.84 | MC |
| SRR7265393 | embryo | 12hN | 2.82 | MC |
| SRR7265394 | embryo | 24hA | 1.12 | MC |
| SRR7265395 | embryo | 24hA | 1.69 | MC |
| SRR7265396 | embryo | 24hA | 2.28 | MC |
| SRR7265397 | embryo | 24hN | 3.46 | MC |
| SRR7265398 | embryo | 24hN | 3.14 | MC |
| SRR7265399 | embryo | 24hN | 2.45 | MC |
| SRR2338866 | endosprem | control | 1.56 | MC |
| SRR1213691 | flower | wt | 0.64 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR5856929 | leaf | control | 0.21 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR5110429 | panicle | Dawn | 0.60 | MC |
| SRR5110431 | panicle | Dawn | 0.48 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.47 | MC |
| SRR5110446 | panicle | Dusk | 0.47 | MC |
| SRR5110447 | panicle | Dusk | 0.53 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.35 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.37 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.33 | MC |
| SRR1633185 | panicle | WT | 1.06 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.32 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.19 | MC |
| SRR5126147 | root | "mock,1_day" | 0.88 | MC |
| SRR5126148 | root | "mock,1_day" | 0.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 0.83 | MC |
| SRR5126155 | root | "mock,7_days" | 0.36 | MC |
| SRR5126157 | root | "mock,7_days" | 0.78 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126165 | root | "mock,14_days" | 0.49 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 0.91 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.57 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.66 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR4947479 | root | control | 1.06 | MC |
| SRR4947480 | root | control | 0.94 | MC |
| SRR4947485 | root | Al | 0.99 | MC |
| SRR4947487 | root | control | 0.53 | MC |
| SRR4947489 | root | control | 0.49 | MC |
| SRR4947498 | root | Al | 0.88 | MC |
| SRR4947501 | root | Al | 0.69 | MC |
| SRR4947502 | root | control | 0.51 | MC |
| SRR4947503 | root | control | 1.11 | MC |
| SRR4947504 | root | control | 1.10 | MC |
| SRR4947505 | root | control | 1.73 | MC |
| SRR4947508 | root | Al | 0.93 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.87 | MC |
| SRR6502094 | root | control | 1.14 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502107 | root | control | 0.28 | MC |
| SRR6502108 | root | control | 0.41 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.75 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.85 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.57 | MC |
| SRR6441554 | seedling | wild_type | 0.33 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.35 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.55 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.79 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.78 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.17 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.90 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.96 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.93 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.73 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.61 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.15 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.56 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.06 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.74 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.81 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.47 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.64 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.80 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.81 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.39 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.37 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |