| SRR4457250 | 2nd_leaf | DAH4 | 0.43 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.35 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.46 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.52 | MC |
| SRR5560729 | caryopsis | wild_type | 0.37 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.05 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.15 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.36 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.62 | MC |
| SRR7265400 | coleoptile | 2dA | 0.29 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR7265388 | embryo | 12hA | 0.53 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.48 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.00 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.70 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.90 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.43 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.74 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.68 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.76 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.58 | MC |
| SRR1213691 | flower | wt | 0.54 | MC |
| SRR8240825 | leaf | wild_type | 2.07 | MC |
| SRR8240819 | leaf | wild_type | 0.20 | MC |
| SRR8240820 | leaf | wild_type | 2.01 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.97 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.42 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.03 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.83 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.68 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.18 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.50 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.44 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.47 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.78 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.27 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.52 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.32 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.71 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.54 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.48 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.35 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.25 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.65 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.35 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.60 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.49 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.51 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.13 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.47 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.91 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.96 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.46 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.08 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.72 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.26 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.08 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.72 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.26 | MC |
| SRR1761528 | leaf | drought | 1.46 | MC |
| SRR1761529 | leaf | drought | 2.08 | MC |
| SRR1761530 | leaf | control | 1.72 | MC |
| SRR1761531 | leaf | control | 2.26 | MC |
| SRR504365 | leaf | wt | 0.72 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.50 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.39 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.03 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.63 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.69 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.54 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.80 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.16 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.78 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.72 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.45 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR1213693 | leaf | wt | 0.46 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.45 | MC |
| SRR5856937 | leaf | salt | 0.21 | MC |
| SRR6168973 | leaf | none (control) | 1.34 | MC |
| SRR6168974 | leaf | none (control) | 0.77 | MC |
| SRR6168975 | leaf | none (control) | 0.80 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168980 | leaf | none (control) | 1.11 | MC |
| SRR6168981 | leaf | none (control) | 1.68 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.37 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.37 | MC |
| SRR8582891 | panicle | PM | 5.63 | MC |
| SRR1213695 | root | wt | 1.30 | MC |
| SRR6502107 | root | control | 0.44 | MC |
| SRR6441554 | seedling | wild_type | 1.84 | MC |
| SRR6441555 | seedling | wild_type | 0.54 | MC |
| SRR2154082 | seedling | wt | 1.81 | MC |
| SRR2154083 | seedling | wt | 1.86 | MC |
| SRR2154084 | seedling | wt | 0.89 | MC |
| SRR2857721 | seedling | drought_stress_6h | 3.02 | MC |
| SRR1944583 | seedling | no_treatment | 0.36 | MC |
| SRR358791 | seedling | wt | 1.61 | MC |
| SRR358792 | seedling | wt | 1.99 | MC |
| SRR358793 | seedling | wt | 2.44 | MC |
| SRR358794 | seedling | wt | 4.36 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.63 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.26 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.24 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.90 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.80 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.96 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.73 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.84 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.65 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.41 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.74 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.48 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.42 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.79 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.97 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.14 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.97 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.93 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.42 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.76 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.08 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.71 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.86 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.86 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.53 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.63 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.54 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.41 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.36 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.82 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.18 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.82 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.84 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.67 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.45 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.14 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.68 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.90 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.84 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.31 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.62 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.32 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.05 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.61 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.40 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.92 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.17 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.31 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.04 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.01 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.37 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.48 | MC |