| SRR4457249 | 2nd_leaf | DAH4 | 3.40 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.97 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.22 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.53 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.19 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.02 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.77 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.13 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.90 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.00 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.60 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.76 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.76 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.61 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.76 | MC |
| SRR3745125 | anther | wt | 2.36 | MC |
| SRR3745126 | anther | wt | 3.04 | MC |
| SRR3745127 | anther | wt | 2.20 | MC |
| SRR358795 | callus | wt | 1.32 | MC |
| SRR358796 | callus | wt | 1.08 | MC |
| SRR358797 | callus | wt | 3.30 | MC |
| SRR358798 | callus | wt | 1.95 | MC |
| SRR5560727 | caryopsis | wild_type | 2.75 | MC |
| SRR5560728 | caryopsis | wild_type | 4.35 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.16 | MC |
| SRR4947495 | root | control | 1.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.46 | MC |
| SRR7265403 | coleoptile | 2dN | 1.75 | MC |
| SRR7265404 | coleoptile | 2dN | 2.41 | MC |
| SRR7265405 | coleoptile | 2dN | 1.74 | MC |
| SRR7265406 | coleoptile | 3dA | 0.36 | MC |
| SRR7265409 | coleoptile | 3dN | 0.98 | MC |
| SRR7265410 | coleoptile | 3dN | 0.81 | MC |
| SRR7265411 | coleoptile | 3dN | 0.99 | MC |
| SRR7265412 | coleoptile | 4dA | 0.61 | MC |
| SRR7265413 | coleoptile | 4dA | 1.43 | MC |
| SRR7265414 | coleoptile | 4dA | 0.77 | MC |
| SRR7265415 | coleoptile | 4dN | 1.70 | MC |
| SRR7265416 | coleoptile | 4dN | 1.58 | MC |
| SRR7265417 | coleoptile | 4dN | 1.78 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.66 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.62 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.51 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.28 | MC |
| SRR7265381 | embryo | 1hN | 0.24 | MC |
| SRR7265382 | embryo | 3hA | 0.46 | MC |
| SRR7265384 | embryo | 3hA | 0.52 | MC |
| SRR7265386 | embryo | 3hN | 0.28 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 1.07 | MC |
| SRR7265389 | embryo | 12hA | 1.70 | MC |
| SRR7265390 | embryo | 12hA | 1.36 | MC |
| SRR7265391 | embryo | 12hN | 1.95 | MC |
| SRR7265392 | embryo | 12hN | 2.64 | MC |
| SRR7265393 | embryo | 12hN | 3.26 | MC |
| SRR7265394 | embryo | 24hA | 1.03 | MC |
| SRR7265395 | embryo | 24hA | 1.95 | MC |
| SRR7265396 | embryo | 24hA | 1.51 | MC |
| SRR7265397 | embryo | 24hN | 1.75 | MC |
| SRR7265398 | embryo | 24hN | 3.92 | MC |
| SRR7265399 | embryo | 24hN | 2.50 | MC |
| SRR2338867 | endosprem | control | 0.45 | MC |
| SRR2338868 | endosprem | high_temperature | 1.79 | MC |
| SRR2338869 | endosprem | high_temperature | 1.06 | MC |
| SRR976168 | flag_leaf | wild_type | 0.38 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.85 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.48 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.68 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.10 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.34 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.01 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.28 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.41 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.69 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.15 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.97 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.69 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.31 | MC |
| SRR1213691 | flower | wt | 2.48 | MC |
| SRR8240824 | leaf | wild_type | 2.39 | MC |
| SRR8240826 | leaf | wild_type | 1.34 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR8240819 | leaf | wild_type | 0.64 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.69 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.88 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.30 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.00 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.40 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.31 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.52 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.61 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.88 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.61 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.88 | MC |
| SRR1761528 | leaf | drought | 1.61 | MC |
| SRR1761529 | leaf | drought | 0.88 | MC |
| SRR504365 | leaf | wt | 2.09 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.01 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.74 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.91 | MC |
| SRR6417968 | leaf | H2O_control | 2.40 | MC |
| SRR6417969 | leaf | H2O_control | 3.40 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.88 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.73 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.96 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.85 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.13 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.44 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.06 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.62 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.87 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.89 | MC |
| SRR1213693 | leaf | wt | 2.27 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.64 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.87 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.31 | MC |
| SRR5856927 | leaf | control | 0.22 | MC |
| SRR5856928 | leaf | control | 0.19 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR5856936 | leaf | salt | 0.46 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.29 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.00 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.46 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.28 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.92 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.95 | MC |
| SRR6168973 | leaf | none (control) | 2.82 | MC |
| SRR6168974 | leaf | none (control) | 1.90 | MC |
| SRR6168975 | leaf | none (control) | 1.10 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.17 | MC |
| SRR6168979 | leaf | none (control) | 0.36 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR8582891 | panicle | PM | 4.50 | MC |
| SRR8582892 | panicle | PM | 6.60 | MC |
| SRR5110429 | panicle | Dawn | 3.19 | MC |
| SRR5110430 | panicle | Dawn | 3.99 | MC |
| SRR5110431 | panicle | Dawn | 3.85 | MC |
| SRR5110432 | panicle | Dawn | 1.38 | MC |
| SRR4947496 | root | control | 1.89 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.35 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.23 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.04 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.34 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.51 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.26 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.57 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.40 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.91 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.75 | MC |
| SRR5110445 | panicle | Dusk | 2.37 | MC |
| SRR5110446 | panicle | Dusk | 1.03 | MC |
| SRR5110447 | panicle | Dusk | 2.15 | MC |
| SRR5110448 | panicle | Dusk | 2.32 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.49 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.08 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.67 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.02 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.13 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.61 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.31 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.90 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.19 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.98 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.01 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.51 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.23 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.48 | MC |
| SRR5126147 | root | "mock,1_day" | 1.53 | MC |
| SRR5126148 | root | "mock,1_day" | 1.74 | MC |
| SRR5126149 | root | "mock,1_day" | 1.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.14 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.38 | MC |
| SRR5126153 | root | "mock,7_days" | 1.20 | MC |
| SRR5126155 | root | "mock,7_days" | 1.18 | MC |
| SRR5126157 | root | "mock,7_days" | 2.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126165 | root | "mock,14_days" | 1.83 | MC |
| SRR5126167 | root | "mock,14_days" | 0.83 | MC |
| SRR5126169 | root | "mock,14_days" | 1.86 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.80 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.75 | MC |
| SRR1213694 | root | wt | 0.52 | MC |
| SRR4947478 | root | control | 0.79 | MC |
| SRR4947479 | root | control | 1.11 | MC |
| SRR4947480 | root | control | 1.96 | MC |
| SRR4947481 | root | control | 2.16 | MC |
| SRR4947482 | root | Al | 1.14 | MC |
| SRR4947483 | root | Al | 0.67 | MC |
| SRR4947484 | root | Al | 2.51 | MC |
| SRR4947485 | root | Al | 1.38 | MC |
| SRR4947487 | root | control | 2.93 | MC |
| SRR4947488 | root | control | 1.67 | MC |
| SRR4947489 | root | control | 2.10 | MC |
| SRR4947490 | root | Al | 1.00 | MC |
| SRR4947491 | root | Al | 1.07 | MC |
| SRR4947492 | root | Al | 1.49 | MC |
| SRR4947493 | root | Al | 1.37 | MC |
| SRR4947494 | root | control | 0.65 | MC |
| SRR4947497 | root | control | 2.67 | MC |
| SRR4947498 | root | Al | 0.95 | MC |
| SRR4947499 | root | Al | 1.41 | MC |
| SRR4947500 | root | Al | 1.89 | MC |
| SRR4947501 | root | Al | 3.49 | MC |
| SRR4947502 | root | control | 1.14 | MC |
| SRR4947503 | root | control | 1.56 | MC |
| SRR4947504 | root | control | 2.25 | MC |
| SRR4947505 | root | control | 2.43 | MC |
| SRR4947506 | root | Al | 0.96 | MC |
| SRR4947507 | root | Al | 2.01 | MC |
| SRR4947508 | root | Al | 1.09 | MC |
| SRR4947509 | root | Al | 2.20 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502094 | root | control | 0.61 | MC |
| SRR6502095 | root | control | 0.71 | MC |
| SRR6502096 | root | control | 0.52 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502106 | root | control | 0.42 | MC |
| SRR6502107 | root | control | 0.65 | MC |
| SRR6502108 | root | control | 0.78 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.47 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.76 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.56 | MC |
| SRR358791 | seedling | wt | 2.46 | MC |
| SRR358792 | seedling | wt | 2.69 | MC |
| SRR358793 | seedling | wt | 0.91 | MC |
| SRR358794 | seedling | wt | 1.02 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.09 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.00 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.95 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.36 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.33 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.27 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.73 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.67 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.88 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.65 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.48 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.70 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.80 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.07 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.70 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.45 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.83 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.44 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.60 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.79 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.84 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.66 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.63 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.87 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.61 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.95 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.04 | MC |