| SRR4457264 | 2nd_leaf | DAH44 | 0.82 | MC |
| SRR5560728 | caryopsis | wild_type | 0.54 | MC |
| SRR5560729 | caryopsis | wild_type | 0.31 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265400 | coleoptile | 2dA | 0.48 | MC |
| SRR7265403 | coleoptile | 2dN | 0.40 | MC |
| SRR7265406 | coleoptile | 3dA | 0.29 | MC |
| SRR7265410 | coleoptile | 3dN | 0.61 | MC |
| SRR7265414 | coleoptile | 4dA | 0.72 | MC |
| SRR7265416 | coleoptile | 4dN | 0.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR7265378 | embryo | 1hA | 0.31 | MC |
| SRR7265379 | embryo | 1hN | 0.28 | MC |
| SRR7265382 | embryo | 3hA | 1.24 | MC |
| SRR7265383 | embryo | 3hA | 0.59 | MC |
| SRR7265385 | embryo | 3hN | 0.45 | MC |
| SRR7265390 | embryo | 12hA | 0.68 | MC |
| SRR2338867 | endosprem | control | 1.17 | MC |
| SRR2338868 | endosprem | high_temperature | 2.02 | MC |
| SRR8240824 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.10 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.52 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.32 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.40 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.43 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.74 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.82 | MC |
| SRR6168973 | leaf | none (control) | 3.10 | MC |
| SRR6168974 | leaf | none (control) | 3.56 | MC |
| SRR6168975 | leaf | none (control) | 1.02 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.89 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.29 | MC |
| SRR6168979 | leaf | none (control) | 0.29 | MC |
| SRR6168981 | leaf | none (control) | 1.40 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.98 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.02 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.79 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.47 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126148 | root | "mock,1_day" | 0.96 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.95 | MC |
| SRR5126153 | root | "mock,7_days" | 0.69 | MC |
| SRR5126155 | root | "mock,7_days" | 0.59 | MC |
| SRR5126157 | root | "mock,7_days" | 1.09 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126165 | root | "mock,14_days" | 0.55 | MC |
| SRR5126169 | root | "mock,14_days" | 0.86 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.07 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502106 | root | control | 0.79 | MC |
| SRR6502108 | root | control | 1.26 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.99 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.68 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.99 | MC |
| SRR2154085 | seedling | wt | 0.68 | MC |
| SRR2154087 | seedling | wt | 1.41 | MC |
| SRR3098741 | seedling | wt | 0.32 | MC |
| SRR3098742 | seedling | wt | 0.79 | MC |
| SRR3098743 | seedling | wt | 0.61 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.84 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.20 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.63 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.76 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.94 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.48 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.74 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.46 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.15 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.62 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.08 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.27 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.64 | MC |