| SRR4457266 | 2nd_leaf | DAH44 | 1.26 | MC |
| SRR3745126 | anther | wt | 2.11 | MC |
| SRR5560727 | caryopsis | wild_type | 0.38 | MC |
| SRR5560728 | caryopsis | wild_type | 0.76 | MC |
| SRR5560729 | caryopsis | wild_type | 0.68 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.79 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR7265412 | coleoptile | 4dA | 0.55 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.84 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.46 | MC |
| SRR1213691 | flower | wt | 2.17 | MC |
| SRR8060836 | leaf | wild_type | 2.28 | MC |
| SRR8240824 | leaf | wild_type | 0.33 | MC |
| SRR8240825 | leaf | wild_type | 0.82 | MC |
| SRR8240819 | leaf | wild_type | 0.80 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.30 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.51 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.21 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.25 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.41 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.18 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.78 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.72 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.76 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.95 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.11 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.73 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.96 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.51 | MC |
| SRR504365 | leaf | wt | 1.11 | MC |
| SRR6417967 | leaf | H2O_control | 0.59 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.34 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.32 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.31 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.46 | MC |
| SRR1213693 | leaf | wt | 2.00 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.24 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.14 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.49 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.82 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.77 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.43 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.55 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.38 | MC |
| SRR6168973 | leaf | none (control) | 3.50 | MC |
| SRR6168974 | leaf | none (control) | 3.72 | MC |
| SRR6168975 | leaf | none (control) | 3.86 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.59 | MC |
| SRR6168979 | leaf | none (control) | 0.43 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.19 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.26 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.13 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.44 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.30 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.65 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.48 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.52 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.12 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.27 | MC |
| SRR5110445 | panicle | Dusk | 1.91 | MC |
| SRR5110446 | panicle | Dusk | 1.64 | MC |
| SRR5110447 | panicle | Dusk | 3.46 | MC |
| SRR5110448 | panicle | Dusk | 3.41 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.95 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.00 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.74 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.53 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.84 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.81 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.73 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.43 | MC |
| SRR1633185 | panicle | WT | 3.25 | MC |
| SRR5126153 | root | "mock,7_days" | 0.28 | MC |
| SRR1213695 | root | wt | 1.89 | MC |
| SRR4947484 | root | Al | 0.54 | MC |
| SRR4947490 | root | Al | 0.53 | MC |
| SRR4947493 | root | Al | 0.54 | MC |
| SRR4947502 | root | control | 0.97 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.63 | MC |
| SRR6441554 | seedling | wild_type | 1.97 | MC |
| SRR6441555 | seedling | wild_type | 1.93 | MC |
| SRR3098742 | seedling | wt | 0.61 | MC |
| SRR3098743 | seedling | wt | 0.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.88 | MC |
| SRR1944583 | seedling | no_treatment | 1.73 | MC |
| SRR358792 | seedling | wt | 2.45 | MC |
| SRR358793 | seedling | wt | 4.27 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.34 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.39 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.49 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.84 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.95 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.19 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.79 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.10 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.07 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.48 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.62 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.71 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.99 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.12 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.85 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.76 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.10 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.80 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.10 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.13 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.01 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.88 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.93 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.77 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.38 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.56 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.12 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.25 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.77 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.13 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.51 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.64 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.73 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.90 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.92 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.57 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.73 | MC |