| SRR3745125 | anther | wt | 2.84 | MC |
| SRR3745126 | anther | wt | 3.16 | MC |
| SRR3745127 | anther | wt | 3.04 | MC |
| SRR5560727 | caryopsis | wild_type | 3.59 | MC |
| SRR5560728 | caryopsis | wild_type | 3.72 | MC |
| SRR5560729 | caryopsis | wild_type | 4.28 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.66 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.85 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.69 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR2338867 | endosprem | control | 0.92 | MC |
| SRR2338868 | endosprem | high_temperature | 0.85 | MC |
| SRR2338869 | endosprem | high_temperature | 0.91 | MC |
| SRR8060836 | leaf | wild_type | 1.21 | MC |
| SRR8060837 | leaf | wild_type | 0.63 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.55 | MC |
| SRR504365 | leaf | wt | 0.22 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.81 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.02 | MC |
| SRR1213692 | leaf | wt | 0.65 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR5110429 | panicle | Dawn | 0.54 | MC |
| SRR5110430 | panicle | Dawn | 1.74 | MC |
| SRR5110431 | panicle | Dawn | 1.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.55 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.10 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.07 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.12 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.71 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.58 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.27 | MC |
| SRR5110445 | panicle | Dusk | 1.22 | MC |
| SRR5110446 | panicle | Dusk | 0.52 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.20 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.71 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.37 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.27 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.19 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.79 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.56 | MC |
| SRR1633182 | panicle | WT | 0.92 | MC |
| SRR1633185 | panicle | WT | 1.00 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.25 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.72 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.27 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126169 | root | "mock,14_days" | 0.49 | MC |
| SRR1213695 | root | wt | 0.18 | MC |
| SRR4947484 | root | Al | 0.54 | MC |
| SRR4947491 | root | Al | 0.48 | MC |
| SRR4947502 | root | control | 0.53 | MC |
| SRR4947508 | root | Al | 0.55 | MC |
| SRR4947509 | root | Al | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.17 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502106 | root | control | 0.35 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.35 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.19 | MC |
| SRR2154082 | seedling | wt | 0.31 | MC |
| SRR2154083 | seedling | wt | 0.28 | MC |
| SRR2154087 | seedling | wt | 0.36 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.55 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.73 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.13 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.85 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.88 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.45 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.54 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.78 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.96 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.00 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.40 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.15 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.52 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.02 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.23 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.61 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.94 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.86 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.77 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.63 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.04 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.30 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.98 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.73 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.34 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.42 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.07 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.84 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.13 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.11 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.61 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.80 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.35 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.18 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.68 | MC |