| SRR4457264 | 2nd_leaf | DAH44 | 5.70 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.80 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.32 | MC |
| SRR5560728 | caryopsis | wild_type | 3.47 | MC |
| SRR5560729 | caryopsis | wild_type | 2.72 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.65 | MC |
| SRR7265393 | embryo | 12hN | 0.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.06 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.09 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.44 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.91 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.74 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.29 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.53 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.56 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.87 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.86 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.13 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.87 | MC |
| SRR504365 | leaf | wt | 0.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.18 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.55 | MC |
| SRR1213693 | leaf | wt | 0.81 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5856934 | leaf | control | 0.36 | MC |
| SRR5856935 | leaf | control | 0.23 | MC |
| SRR5856937 | leaf | salt | 1.80 | MC |
| SRR6168973 | leaf | none (control) | 2.08 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.80 | MC |
| SRR8582891 | panicle | PM | 3.58 | MC |
| SRR8582892 | panicle | PM | 3.84 | MC |
| SRR8582893 | panicle | PM | 3.83 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR1633185 | panicle | WT | 3.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5126147 | root | "mock,1_day" | 0.95 | MC |
| SRR5126148 | root | "mock,1_day" | 0.98 | MC |
| SRR5126149 | root | "mock,1_day" | 1.46 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.59 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.12 | MC |
| SRR5126157 | root | "mock,7_days" | 1.29 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.81 | MC |
| SRR5126165 | root | "mock,14_days" | 0.49 | MC |
| SRR5126167 | root | "mock,14_days" | 2.84 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.88 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.26 | MC |
| SRR1213695 | root | wt | 0.94 | MC |
| SRR6441554 | seedling | wild_type | 0.69 | MC |
| SRR6441555 | seedling | wild_type | 2.08 | MC |
| SRR2154086 | seedling | wt | 2.16 | MC |
| SRR2154085 | seedling | wt | 1.89 | MC |
| SRR2154087 | seedling | wt | 0.96 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.19 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.62 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.24 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.10 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.93 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.29 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.46 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.81 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.95 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.15 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.35 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.69 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.39 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.85 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.20 | MC |