| SRR4457251 | 2nd_leaf | DAH4 | 0.52 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.51 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.45 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.09 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.45 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.43 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.98 | MC |
| SRR3745125 | anther | wt | 1.26 | MC |
| SRR3745126 | anther | wt | 1.36 | MC |
| SRR3745127 | anther | wt | 1.65 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.96 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.99 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265379 | embryo | 1hN | 0.69 | MC |
| SRR7265381 | embryo | 1hN | 0.42 | MC |
| SRR7265383 | embryo | 3hA | 0.43 | MC |
| SRR7265384 | embryo | 3hA | 0.41 | MC |
| SRR7265385 | embryo | 3hN | 0.41 | MC |
| SRR7265386 | embryo | 3hN | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.27 | MC |
| SRR7265388 | embryo | 12hA | 0.65 | MC |
| SRR7265389 | embryo | 12hA | 1.03 | MC |
| SRR7265390 | embryo | 12hA | 0.96 | MC |
| SRR7265391 | embryo | 12hN | 1.26 | MC |
| SRR7265392 | embryo | 12hN | 0.75 | MC |
| SRR7265393 | embryo | 12hN | 0.64 | MC |
| SRR7265395 | embryo | 24hA | 0.51 | MC |
| SRR2338868 | endosprem | high_temperature | 0.70 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.88 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.99 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.42 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.41 | MC |
| SRR1213691 | flower | wt | 0.50 | MC |
| SRR8060835 | leaf | wild_type | 0.62 | MC |
| SRR8060836 | leaf | wild_type | 0.92 | MC |
| SRR8060837 | leaf | wild_type | 1.04 | MC |
| SRR8240825 | leaf | wild_type | 0.45 | MC |
| SRR8240826 | leaf | wild_type | 0.34 | MC |
| SRR8240818 | leaf | wild_type | 0.87 | MC |
| SRR8240819 | leaf | wild_type | 1.25 | MC |
| SRR8240820 | leaf | wild_type | 2.20 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.76 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.67 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.39 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.69 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.58 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.69 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.68 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.10 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.56 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.46 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.36 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.66 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.13 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.71 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.19 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.05 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR504365 | leaf | wt | 0.41 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR6417967 | leaf | H2O_control | 1.09 | MC |
| SRR6417969 | leaf | H2O_control | 0.51 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.73 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.34 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.40 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.48 | MC |
| SRR1213693 | leaf | wt | 0.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.54 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502088 | leaf | control | 0.34 | MC |
| SRR6502090 | leaf | control | 0.50 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.66 | MC |
| SRR6502102 | leaf | control | 0.68 | MC |
| SRR8582888 | panicle | AM | 1.64 | MC |
| SRR8582889 | panicle | AM | 1.15 | MC |
| SRR8582890 | panicle | AM | 0.83 | MC |
| SRR8582891 | panicle | PM | 0.91 | MC |
| SRR8582892 | panicle | PM | 1.21 | MC |
| SRR8582893 | panicle | PM | 0.49 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.29 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.27 | MC |
| SRR5126149 | root | "mock,1_day" | 0.44 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126157 | root | "mock,7_days" | 1.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126169 | root | "mock,14_days" | 0.56 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.40 | MC |
| SRR1213694 | root | wt | 1.32 | MC |
| SRR1213695 | root | wt | 1.05 | MC |
| SRR4947488 | root | control | 0.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.10 | MC |
| SRR6502095 | root | control | 1.12 | MC |
| SRR6502096 | root | control | 0.41 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502106 | root | control | 0.38 | MC |
| SRR6502107 | root | control | 0.70 | MC |
| SRR6502108 | root | control | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.40 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.33 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.74 | MC |
| SRR6441554 | seedling | wild_type | 0.51 | MC |
| SRR6441555 | seedling | wild_type | 0.37 | MC |
| SRR2154086 | seedling | wt | 0.69 | MC |
| SRR2154085 | seedling | wt | 1.02 | MC |
| SRR2154087 | seedling | wt | 0.71 | MC |
| SRR3098741 | seedling | wt | 0.44 | MC |
| SRR3098742 | seedling | wt | 0.33 | MC |
| SRR3098743 | seedling | wt | 1.11 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.59 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.25 | MC |
| SRR1944583 | seedling | no_treatment | 0.41 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.69 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.83 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.45 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.43 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.51 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.34 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.47 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.99 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.45 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.80 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.18 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.48 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.19 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.26 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.31 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.01 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.19 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.85 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.39 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.65 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.69 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.06 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.50 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.20 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.89 | MC |