| SRR4457252 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.49 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.95 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.12 | MC |
| SRR3745125 | anther | wt | 0.57 | MC |
| SRR358795 | callus | wt | 5.96 | MC |
| SRR358796 | callus | wt | 3.97 | MC |
| SRR358797 | callus | wt | 1.89 | MC |
| SRR358798 | callus | wt | 6.70 | MC |
| SRR6320498 | carpel | wt | 4.12 | MC |
| SRR5560727 | caryopsis | wild_type | 1.60 | MC |
| SRR5560728 | caryopsis | wild_type | 0.96 | MC |
| SRR5560729 | caryopsis | wild_type | 0.80 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.16 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.45 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.25 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.12 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.89 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.14 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.22 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.99 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.83 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.25 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.69 | MC |
| SRR7265376 | embryo | 1hA | 2.23 | MC |
| SRR7265377 | embryo | 1hA | 2.99 | MC |
| SRR7265378 | embryo | 1hA | 2.33 | MC |
| SRR7265380 | embryo | 1hN | 2.30 | MC |
| SRR7265381 | embryo | 1hN | 3.01 | MC |
| SRR7265382 | embryo | 3hA | 4.12 | MC |
| SRR7265386 | embryo | 3hN | 2.06 | MC |
| SRR7265387 | embryo | 3hN | 2.57 | MC |
| SRR7265388 | embryo | 12hA | 4.53 | MC |
| SRR7265389 | embryo | 12hA | 3.89 | MC |
| SRR2338866 | endosprem | control | 4.60 | MC |
| SRR2338867 | endosprem | control | 1.00 | MC |
| SRR2338868 | endosprem | high_temperature | 1.46 | MC |
| SRR2338869 | endosprem | high_temperature | 1.76 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.79 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.54 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.81 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.53 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.12 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.97 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.94 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.17 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.59 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.46 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.57 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.13 | MC |
| SRR1213691 | flower | wt | 2.59 | MC |
| SRR8060837 | leaf | wild_type | 2.65 | MC |
| SRR8240824 | leaf | wild_type | 1.56 | MC |
| SRR8240825 | leaf | wild_type | 1.78 | MC |
| SRR8240826 | leaf | wild_type | 0.50 | MC |
| SRR8240820 | leaf | wild_type | 0.20 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.64 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.73 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.44 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.76 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.36 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.91 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.42 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.33 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.88 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.22 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.95 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.92 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.98 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.41 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.95 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.43 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.91 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.02 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.68 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.24 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.76 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.94 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.61 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.71 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.59 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.27 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.19 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.16 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.07 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.95 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.69 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.95 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.69 | MC |
| SRR1761528 | leaf | drought | 0.95 | MC |
| SRR1761529 | leaf | drought | 1.69 | MC |
| SRR504365 | leaf | wt | 2.14 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.98 | MC |
| SRR6417967 | leaf | H2O_control | 1.07 | MC |
| SRR6417968 | leaf | H2O_control | 0.45 | MC |
| SRR6417969 | leaf | H2O_control | 1.89 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.21 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.11 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.14 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.44 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.50 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.58 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.32 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.75 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.02 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.05 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.28 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.02 | MC |
| SRR1213692 | leaf | wt | 2.78 | MC |
| SRR1213693 | leaf | wt | 0.61 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.46 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.17 | MC |
| SRR6502088 | leaf | control | 1.95 | MC |
| SRR6502089 | leaf | control | 3.45 | MC |
| SRR6502090 | leaf | control | 2.26 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.13 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.24 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.85 | MC |
| SRR6502101 | leaf | control | 3.54 | MC |
| SRR6502102 | leaf | control | 2.42 | MC |
| SRR6168979 | leaf | none (control) | 0.82 | MC |
| SRR5110430 | panicle | Dawn | 4.61 | MC |
| SRR5110431 | panicle | Dawn | 4.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.50 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.14 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.29 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.40 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.86 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.43 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.28 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.20 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.89 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.16 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.06 | MC |
| SRR5110447 | panicle | Dusk | 3.22 | MC |
| SRR5110448 | panicle | Dusk | 5.33 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.03 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.50 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.00 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.28 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.36 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.63 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.46 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.80 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.83 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.57 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.17 | MC |
| SRR5126147 | root | "mock,1_day" | 2.43 | MC |
| SRR5126148 | root | "mock,1_day" | 2.66 | MC |
| SRR5126149 | root | "mock,1_day" | 1.22 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.91 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.85 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.97 | MC |
| SRR5126153 | root | "mock,7_days" | 1.34 | MC |
| SRR5126155 | root | "mock,7_days" | 2.29 | MC |
| SRR5126157 | root | "mock,7_days" | 3.61 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.65 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.00 | MC |
| SRR5126165 | root | "mock,14_days" | 1.51 | MC |
| SRR5126167 | root | "mock,14_days" | 1.56 | MC |
| SRR5126169 | root | "mock,14_days" | 3.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.30 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.40 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.48 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.35 | MC |
| SRR1213694 | root | wt | 1.25 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947484 | root | Al | 4.90 | MC |
| SRR4947499 | root | Al | 4.11 | MC |
| SRR4947507 | root | Al | 5.42 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.35 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.84 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.78 | MC |
| SRR6502094 | root | control | 3.14 | MC |
| SRR6502095 | root | control | 2.05 | MC |
| SRR6502096 | root | control | 2.28 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.26 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.30 | MC |
| SRR6502106 | root | control | 3.00 | MC |
| SRR6502107 | root | control | 2.54 | MC |
| SRR6502108 | root | control | 2.13 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.15 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.58 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.31 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.33 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.95 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.53 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.88 | MC |
| SRR6441555 | seedling | wild_type | 2.96 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.06 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.75 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.81 | MC |
| SRR1944583 | seedling | no_treatment | 3.72 | MC |
| SRR358791 | seedling | wt | 4.25 | MC |
| SRR358792 | seedling | wt | 1.62 | MC |
| SRR358793 | seedling | wt | 4.13 | MC |
| SRR358794 | seedling | wt | 2.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.33 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.97 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.91 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.26 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.79 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.93 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.48 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.22 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.90 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.88 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.16 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.84 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.50 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.41 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.94 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.22 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.49 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 9.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.36 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.22 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.14 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.72 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.61 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.48 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.36 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.03 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.20 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.17 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.69 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.95 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.17 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.38 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.16 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.54 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.20 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.05 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.72 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.14 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.53 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.54 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.22 | MC |