| SRR358795 | callus | wt | 2.85 | MC |
| SRR358796 | callus | wt | 5.91 | MC |
| SRR358797 | callus | wt | 2.75 | MC |
| SRR358798 | callus | wt | 5.45 | MC |
| SRR5560729 | caryopsis | wild_type | 5.11 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.74 | MC |
| SRR4947495 | root | control | 1.93 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.77 | MC |
| SRR7265403 | coleoptile | 2dN | 2.02 | MC |
| SRR7265404 | coleoptile | 2dN | 1.06 | MC |
| SRR7265405 | coleoptile | 2dN | 1.45 | MC |
| SRR7265409 | coleoptile | 3dN | 1.16 | MC |
| SRR7265410 | coleoptile | 3dN | 0.72 | MC |
| SRR7265411 | coleoptile | 3dN | 1.53 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.06 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.11 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.88 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.29 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.03 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.02 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.00 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.75 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.16 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.94 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.61 | MC |
| SRR7265388 | embryo | 12hA | 1.60 | MC |
| SRR7265389 | embryo | 12hA | 3.09 | MC |
| SRR7265390 | embryo | 12hA | 1.90 | MC |
| SRR7265391 | embryo | 12hN | 3.20 | MC |
| SRR7265392 | embryo | 12hN | 3.17 | MC |
| SRR7265393 | embryo | 12hN | 3.42 | MC |
| SRR7265394 | embryo | 24hA | 1.43 | MC |
| SRR7265395 | embryo | 24hA | 2.32 | MC |
| SRR7265396 | embryo | 24hA | 1.68 | MC |
| SRR7265397 | embryo | 24hN | 1.29 | MC |
| SRR7265398 | embryo | 24hN | 2.01 | MC |
| SRR7265399 | embryo | 24hN | 1.66 | MC |
| SRR976168 | flag_leaf | wild_type | 2.51 | MC |
| SRR1213691 | flower | wt | 3.95 | MC |
| SRR8240824 | leaf | wild_type | 0.68 | MC |
| SRR8240825 | leaf | wild_type | 0.77 | MC |
| SRR8240826 | leaf | wild_type | 1.15 | MC |
| SRR8240819 | leaf | wild_type | 1.42 | MC |
| SRR8240820 | leaf | wild_type | 2.40 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.39 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.42 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.84 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.62 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.71 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.06 | MC |
| SRR6502088 | leaf | control | 2.30 | MC |
| SRR6502089 | leaf | control | 2.78 | MC |
| SRR6502090 | leaf | control | 2.26 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.00 | MC |
| SRR6502102 | leaf | control | 3.89 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.16 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.86 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.31 | MC |
| SRR6168974 | leaf | none (control) | 4.63 | MC |
| SRR6168975 | leaf | none (control) | 4.10 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.41 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.49 | MC |
| SRR8582888 | panicle | AM | 2.34 | MC |
| SRR8582891 | panicle | PM | 1.32 | MC |
| SRR8582892 | panicle | PM | 0.92 | MC |
| SRR8582893 | panicle | PM | 0.42 | MC |
| SRR4947496 | root | control | 0.70 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.04 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.74 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.63 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.64 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.20 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.47 | MC |
| SRR5126147 | root | "mock,1_day" | 2.72 | MC |
| SRR5126148 | root | "mock,1_day" | 2.81 | MC |
| SRR5126149 | root | "mock,1_day" | 2.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.53 | MC |
| SRR5126153 | root | "mock,7_days" | 2.82 | MC |
| SRR5126165 | root | "mock,14_days" | 4.62 | MC |
| SRR5126169 | root | "mock,14_days" | 4.12 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.14 | MC |
| SRR4947478 | root | control | 0.76 | MC |
| SRR4947479 | root | control | 0.62 | MC |
| SRR4947480 | root | control | 2.27 | MC |
| SRR4947481 | root | control | 1.83 | MC |
| SRR4947483 | root | Al | 1.01 | MC |
| SRR4947484 | root | Al | 2.46 | MC |
| SRR4947485 | root | Al | 1.34 | MC |
| SRR4947487 | root | control | 1.76 | MC |
| SRR4947488 | root | control | 1.44 | MC |
| SRR4947489 | root | control | 1.22 | MC |
| SRR4947491 | root | Al | 2.10 | MC |
| SRR4947492 | root | Al | 1.06 | MC |
| SRR4947493 | root | Al | 1.21 | MC |
| SRR4947494 | root | control | 0.57 | MC |
| SRR4947497 | root | control | 3.01 | MC |
| SRR4947499 | root | Al | 4.70 | MC |
| SRR4947501 | root | Al | 6.05 | MC |
| SRR4947502 | root | control | 3.52 | MC |
| SRR4947503 | root | control | 2.07 | MC |
| SRR4947504 | root | control | 1.18 | MC |
| SRR4947505 | root | control | 2.13 | MC |
| SRR4947506 | root | Al | 2.55 | MC |
| SRR4947508 | root | Al | 2.12 | MC |
| SRR4947509 | root | Al | 3.02 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.33 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.38 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.37 | MC |
| SRR6502094 | root | control | 1.55 | MC |
| SRR6502095 | root | control | 1.48 | MC |
| SRR6502096 | root | control | 1.53 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.41 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.57 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.72 | MC |
| SRR6502107 | root | control | 3.71 | MC |
| SRR6502108 | root | control | 2.85 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.67 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.24 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.20 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.23 | MC |
| SRR2154086 | seedling | wt | 4.45 | MC |
| SRR2154084 | seedling | wt | 2.64 | MC |
| SRR3098742 | seedling | wt | 2.56 | MC |
| SRR3098743 | seedling | wt | 2.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.63 | MC |
| SRR358791 | seedling | wt | 3.95 | MC |
| SRR358792 | seedling | wt | 5.77 | MC |
| SRR358793 | seedling | wt | 6.53 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.87 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.32 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.30 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.26 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.44 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.16 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.96 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.36 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.68 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.23 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.09 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.29 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.88 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.28 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.22 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.12 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.30 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.17 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.05 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.79 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.67 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.57 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.90 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.97 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.90 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.28 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.08 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.64 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.18 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.18 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.11 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.85 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.91 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.48 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.68 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.97 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.27 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.79 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.66 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.95 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.12 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.80 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.68 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.15 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.13 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.71 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.81 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.08 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.43 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.84 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.37 | MC |