| SRR4457256 | 2nd_leaf | DAH20 | 4.43 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.34 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.55 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.12 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.63 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.10 | MC |
| SRR3745127 | anther | wt | 5.25 | MC |
| SRR358795 | callus | wt | 9.46 | MC |
| SRR358796 | callus | wt | 9.03 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.10 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.22 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.97 | MC |
| SRR7265400 | coleoptile | 2dA | 2.88 | MC |
| SRR7265401 | coleoptile | 2dA | 2.56 | MC |
| SRR7265402 | coleoptile | 2dA | 2.60 | MC |
| SRR7265406 | coleoptile | 3dA | 2.67 | MC |
| SRR7265407 | coleoptile | 3dA | 2.41 | MC |
| SRR7265408 | coleoptile | 3dA | 2.09 | MC |
| SRR7265409 | coleoptile | 3dN | 3.87 | MC |
| SRR7265410 | coleoptile | 3dN | 3.34 | MC |
| SRR7265411 | coleoptile | 3dN | 3.42 | MC |
| SRR7265412 | coleoptile | 4dA | 2.97 | MC |
| SRR7265414 | coleoptile | 4dA | 4.02 | MC |
| SRR7265416 | coleoptile | 4dN | 3.58 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.33 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.00 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.59 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.13 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.25 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.40 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.32 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.71 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.87 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.64 | MC |
| SRR7265380 | embryo | 1hN | 3.57 | MC |
| SRR7265394 | embryo | 24hA | 3.57 | MC |
| SRR7265395 | embryo | 24hA | 4.84 | MC |
| SRR7265396 | embryo | 24hA | 3.81 | MC |
| SRR2338866 | endosprem | control | 2.82 | MC |
| SRR2338867 | endosprem | control | 2.11 | MC |
| SRR976168 | flag_leaf | wild_type | 0.82 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.73 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.90 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.70 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.47 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.02 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.10 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.05 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.17 | MC |
| SRR8240824 | leaf | wild_type | 0.93 | MC |
| SRR8240825 | leaf | wild_type | 0.58 | MC |
| SRR8240826 | leaf | wild_type | 0.59 | MC |
| SRR8240819 | leaf | wild_type | 0.50 | MC |
| SRR8240820 | leaf | wild_type | 0.40 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.39 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.19 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.51 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.10 | MC |
| SRR6417967 | leaf | H2O_control | 2.51 | MC |
| SRR6417968 | leaf | H2O_control | 2.33 | MC |
| SRR6417969 | leaf | H2O_control | 2.41 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 3.12 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.71 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.77 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.92 | MC |
| SRR1213692 | leaf | wt | 4.44 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.75 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.61 | MC |
| SRR6502088 | leaf | control | 3.13 | MC |
| SRR6502089 | leaf | control | 2.84 | MC |
| SRR6502090 | leaf | control | 2.72 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.12 | MC |
| SRR6502100 | leaf | control | 2.68 | MC |
| SRR6502101 | leaf | control | 2.74 | MC |
| SRR6502102 | leaf | control | 3.46 | MC |
| SRR5856927 | leaf | control | 0.98 | MC |
| SRR5856928 | leaf | control | 0.83 | MC |
| SRR5856929 | leaf | control | 1.36 | MC |
| SRR5856930 | leaf | salt | 0.66 | MC |
| SRR5856931 | leaf | salt | 0.83 | MC |
| SRR5856932 | leaf | salt | 0.86 | MC |
| SRR5856933 | leaf | control | 1.47 | MC |
| SRR5856934 | leaf | control | 0.95 | MC |
| SRR5856935 | leaf | control | 1.05 | MC |
| SRR5856936 | leaf | salt | 0.99 | MC |
| SRR5856937 | leaf | salt | 1.00 | MC |
| SRR5856938 | leaf | salt | 0.96 | MC |
| SRR6168973 | leaf | none (control) | 4.12 | MC |
| SRR6168974 | leaf | none (control) | 3.80 | MC |
| SRR6168975 | leaf | none (control) | 3.49 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.67 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.95 | MC |
| SRR6168979 | leaf | none (control) | 0.68 | MC |
| SRR6168980 | leaf | none (control) | 0.89 | MC |
| SRR6168981 | leaf | none (control) | 2.58 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.69 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.31 | MC |
| SRR5110429 | panicle | Dawn | 0.68 | MC |
| SRR5110431 | panicle | Dawn | 0.71 | MC |
| SRR4947496 | root | control | 4.75 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.53 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.46 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.42 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.87 | MC |
| SRR5110445 | panicle | Dusk | 0.56 | MC |
| SRR5110446 | panicle | Dusk | 0.47 | MC |
| SRR5110447 | panicle | Dusk | 0.36 | MC |
| SRR5110448 | panicle | Dusk | 0.51 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.64 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.62 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.28 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.46 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.42 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.06 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.97 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.15 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.14 | MC |
| SRR4947480 | root | control | 4.47 | MC |
| SRR4947484 | root | Al | 4.21 | MC |
| SRR4947488 | root | control | 4.41 | MC |
| SRR4947492 | root | Al | 5.24 | MC |
| SRR4947493 | root | Al | 3.79 | MC |
| SRR6502094 | root | control | 3.55 | MC |
| SRR6502095 | root | control | 3.42 | MC |
| SRR6502096 | root | control | 2.32 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.17 | MC |
| SRR6502106 | root | control | 3.42 | MC |
| SRR6502107 | root | control | 3.22 | MC |
| SRR6502108 | root | control | 3.37 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.86 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.87 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.63 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.80 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.48 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.18 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.54 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.03 | MC |
| SRR2154082 | seedling | wt | 1.74 | MC |
| SRR2154085 | seedling | wt | 3.50 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.84 | MC |
| SRR1944583 | seedling | no_treatment | 3.12 | MC |
| SRR358791 | seedling | wt | 5.35 | MC |
| SRR358792 | seedling | wt | 4.80 | MC |
| SRR358793 | seedling | wt | 2.03 | MC |
| SRR358794 | seedling | wt | 2.15 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.70 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.33 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.73 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.81 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.86 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.32 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.53 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.84 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.12 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.57 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.18 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.90 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.68 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.76 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.28 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.16 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.66 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.98 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.28 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.15 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.40 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.47 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.03 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.96 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.12 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.10 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.80 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.45 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.93 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.69 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.52 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.48 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.90 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.05 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.78 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.48 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.38 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.65 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.45 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.69 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.21 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.52 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.10 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.66 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.05 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.70 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.35 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.22 | MC |