| SRR5560729 | caryopsis | wild_type | 3.11 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.04 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR7265400 | coleoptile | 2dA | 2.20 | MC |
| SRR7265401 | coleoptile | 2dA | 2.38 | MC |
| SRR7265402 | coleoptile | 2dA | 2.02 | MC |
| SRR7265406 | coleoptile | 3dA | 1.27 | MC |
| SRR7265407 | coleoptile | 3dA | 0.65 | MC |
| SRR7265408 | coleoptile | 3dA | 1.05 | MC |
| SRR7265409 | coleoptile | 3dN | 0.95 | MC |
| SRR7265410 | coleoptile | 3dN | 2.00 | MC |
| SRR7265411 | coleoptile | 3dN | 2.57 | MC |
| SRR7265414 | coleoptile | 4dA | 0.69 | MC |
| SRR7265415 | coleoptile | 4dN | 2.98 | MC |
| SRR7265417 | coleoptile | 4dN | 3.44 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 4.05 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.34 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.26 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.76 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.53 | MC |
| SRR7265394 | embryo | 24hA | 0.70 | MC |
| SRR7265396 | embryo | 24hA | 1.13 | MC |
| SRR2338867 | endosprem | control | 1.29 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.55 | MC |
| SRR1213691 | flower | wt | 0.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.55 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.82 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.01 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.03 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.98 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.22 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.71 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.48 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.18 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.61 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.79 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.42 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.18 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.43 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.91 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.40 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.44 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.13 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.81 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.95 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.66 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.27 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.82 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.25 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.04 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.00 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.24 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.00 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.24 | MC |
| SRR1761528 | leaf | drought | 2.00 | MC |
| SRR1761529 | leaf | drought | 2.24 | MC |
| SRR6417968 | leaf | H2O_control | 0.85 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.81 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.81 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.93 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.75 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.27 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.49 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.48 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.43 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.47 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.35 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.30 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.71 | MC |
| SRR5856927 | leaf | control | 1.71 | MC |
| SRR5856928 | leaf | control | 1.36 | MC |
| SRR5856929 | leaf | control | 0.58 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 1.00 | MC |
| SRR5856934 | leaf | control | 1.55 | MC |
| SRR5856935 | leaf | control | 1.45 | MC |
| SRR5856936 | leaf | salt | 0.66 | MC |
| SRR5856937 | leaf | salt | 0.41 | MC |
| SRR5856938 | leaf | salt | 0.51 | MC |
| SRR6168973 | leaf | none (control) | 0.73 | MC |
| SRR6168974 | leaf | none (control) | 0.64 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.63 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.69 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.40 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.81 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.48 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.47 | MC |
| SRR5126157 | root | "mock,7_days" | 4.07 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126165 | root | "mock,14_days" | 3.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR1213694 | root | wt | 2.99 | MC |
| SRR1213695 | root | wt | 0.27 | MC |
| SRR4947487 | root | control | 4.26 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.67 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.84 | MC |
| SRR6441554 | seedling | wild_type | 0.29 | MC |
| SRR2154086 | seedling | wt | 1.48 | MC |
| SRR2154082 | seedling | wt | 1.41 | MC |
| SRR2154083 | seedling | wt | 1.25 | MC |
| SRR2154084 | seedling | wt | 1.32 | MC |
| SRR2154085 | seedling | wt | 1.84 | MC |
| SRR2154087 | seedling | wt | 0.97 | MC |
| SRR3098741 | seedling | wt | 0.32 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.21 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.64 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.66 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.10 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.55 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.83 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.53 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.29 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.20 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.32 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.78 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.18 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.89 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.05 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.05 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.07 | MC |