| SRR4457250 | 2nd_leaf | DAH4 | 1.45 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.76 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.98 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.99 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.67 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.41 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.81 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.09 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.27 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.04 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.90 | MC |
| SRR6320498 | carpel | wt | 1.20 | MC |
| SRR5560728 | caryopsis | wild_type | 3.54 | MC |
| SRR5560729 | caryopsis | wild_type | 3.09 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.67 | MC |
| SRR7265400 | coleoptile | 2dA | 2.00 | MC |
| SRR7265401 | coleoptile | 2dA | 1.61 | MC |
| SRR7265402 | coleoptile | 2dA | 2.30 | MC |
| SRR7265403 | coleoptile | 2dN | 0.57 | MC |
| SRR7265404 | coleoptile | 2dN | 0.87 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.45 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.76 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.07 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.22 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.58 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.75 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.86 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.05 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.01 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.17 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.93 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.18 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.80 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.23 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.70 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.14 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.02 | MC |
| SRR8060835 | leaf | wild_type | 0.38 | MC |
| SRR8060836 | leaf | wild_type | 0.76 | MC |
| SRR8060837 | leaf | wild_type | 0.79 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.73 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.01 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.13 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.13 | MC |
| SRR1761529 | leaf | drought | 5.13 | MC |
| SRR504365 | leaf | wt | 0.29 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.61 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.50 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.66 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.95 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.13 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.83 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.75 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.13 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.01 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.65 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.25 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.47 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.45 | MC |
| SRR6502089 | leaf | control | 0.82 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.26 | MC |
| SRR6502100 | leaf | control | 0.68 | MC |
| SRR5856928 | leaf | control | 0.38 | MC |
| SRR5856937 | leaf | salt | 0.51 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.33 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.77 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.75 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.54 | MC |
| SRR6168973 | leaf | none (control) | 4.06 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.76 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR8582890 | panicle | AM | 0.41 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.89 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.98 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.31 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.70 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.55 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.41 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.58 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.45 | MC |
| SRR5126148 | root | "mock,1_day" | 1.22 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.65 | MC |
| SRR5126155 | root | "mock,7_days" | 0.55 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.74 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.91 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213695 | root | wt | 0.80 | MC |
| SRR4947478 | root | control | 0.76 | MC |
| SRR4947506 | root | Al | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 3.14 | MC |
| SRR2154086 | seedling | wt | 4.15 | MC |
| SRR2154083 | seedling | wt | 2.37 | MC |
| SRR2154084 | seedling | wt | 3.23 | MC |
| SRR2154085 | seedling | wt | 3.48 | MC |
| SRR3098741 | seedling | wt | 2.24 | MC |
| SRR3098743 | seedling | wt | 2.55 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.22 | MC |
| SRR1944583 | seedling | no_treatment | 4.53 | MC |
| SRR358792 | seedling | wt | 1.02 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.77 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.18 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.96 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.84 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.03 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.95 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.63 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.44 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.04 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.77 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.44 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.59 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.38 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.37 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.90 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.29 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.89 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.82 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.30 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.96 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.82 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.15 | MC |