| SRR3745126 | anther | wt | 0.85 | MC |
| SRR3745127 | anther | wt | 0.74 | MC |
| SRR358795 | callus | wt | 5.14 | MC |
| SRR358796 | callus | wt | 5.20 | MC |
| SRR358797 | callus | wt | 6.85 | MC |
| SRR358798 | callus | wt | 6.77 | MC |
| SRR5560727 | caryopsis | wild_type | 0.45 | MC |
| SRR5560728 | caryopsis | wild_type | 4.15 | MC |
| SRR5560729 | caryopsis | wild_type | 0.43 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.06 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.77 | MC |
| SRR7265400 | coleoptile | 2dA | 1.21 | MC |
| SRR7265401 | coleoptile | 2dA | 1.17 | MC |
| SRR7265402 | coleoptile | 2dA | 1.36 | MC |
| SRR7265412 | coleoptile | 4dA | 0.50 | MC |
| SRR7265417 | coleoptile | 4dN | 0.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.73 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265379 | embryo | 1hN | 0.29 | MC |
| SRR7265380 | embryo | 1hN | 0.45 | MC |
| SRR7265388 | embryo | 12hA | 2.40 | MC |
| SRR7265389 | embryo | 12hA | 1.13 | MC |
| SRR7265390 | embryo | 12hA | 1.33 | MC |
| SRR7265394 | embryo | 24hA | 2.62 | MC |
| SRR7265395 | embryo | 24hA | 0.78 | MC |
| SRR7265396 | embryo | 24hA | 1.53 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.99 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.42 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.08 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.73 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.82 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.73 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.29 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.76 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.79 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.37 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.96 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.39 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.82 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.39 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.92 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.34 | MC |
| SRR504365 | leaf | wt | 0.74 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.74 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.68 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.19 | MC |
| SRR1213692 | leaf | wt | 0.92 | MC |
| SRR1213693 | leaf | wt | 0.65 | MC |
| SRR5856933 | leaf | control | 0.87 | MC |
| SRR5856934 | leaf | control | 0.32 | MC |
| SRR5856935 | leaf | control | 0.72 | MC |
| SRR5856936 | leaf | salt | 0.78 | MC |
| SRR5856937 | leaf | salt | 0.37 | MC |
| SRR6168973 | leaf | none (control) | 1.58 | MC |
| SRR6168974 | leaf | none (control) | 2.46 | MC |
| SRR6168975 | leaf | none (control) | 3.55 | MC |
| SRR8582891 | panicle | PM | 1.34 | MC |
| SRR8582892 | panicle | PM | 0.96 | MC |
| SRR8582893 | panicle | PM | 1.60 | MC |
| SRR4947496 | root | control | 0.66 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.83 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 1.49 | MC |
| SRR5126148 | root | "mock,1_day" | 0.65 | MC |
| SRR5126149 | root | "mock,1_day" | 1.09 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.44 | MC |
| SRR5126153 | root | "mock,7_days" | 1.62 | MC |
| SRR5126155 | root | "mock,7_days" | 2.29 | MC |
| SRR5126157 | root | "mock,7_days" | 2.16 | MC |
| SRR5126165 | root | "mock,14_days" | 3.49 | MC |
| SRR5126167 | root | "mock,14_days" | 2.49 | MC |
| SRR5126169 | root | "mock,14_days" | 2.78 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.97 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.13 | MC |
| SRR1213694 | root | wt | 0.39 | MC |
| SRR1213695 | root | wt | 0.44 | MC |
| SRR4947480 | root | control | 0.68 | MC |
| SRR4947481 | root | control | 1.86 | MC |
| SRR4947484 | root | Al | 0.94 | MC |
| SRR4947485 | root | Al | 0.73 | MC |
| SRR4947489 | root | control | 1.06 | MC |
| SRR4947492 | root | Al | 0.72 | MC |
| SRR4947497 | root | control | 2.96 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947505 | root | control | 3.05 | MC |
| SRR4947509 | root | Al | 0.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.40 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.61 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.35 | MC |
| SRR6502094 | root | control | 0.56 | MC |
| SRR6502095 | root | control | 1.34 | MC |
| SRR6502096 | root | control | 0.60 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.30 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.62 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.25 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.44 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.32 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.64 | MC |
| SRR2154086 | seedling | wt | 0.50 | MC |
| SRR2154085 | seedling | wt | 1.08 | MC |
| SRR2154087 | seedling | wt | 0.77 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.60 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.02 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.78 | MC |
| SRR358791 | seedling | wt | 0.73 | MC |
| SRR358792 | seedling | wt | 1.58 | MC |
| SRR358793 | seedling | wt | 1.28 | MC |
| SRR358794 | seedling | wt | 1.13 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.04 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.80 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.77 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.50 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.48 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.18 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.77 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.71 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.23 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.73 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.55 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.02 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.91 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.29 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.62 | MC |