| SRR4457253 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.34 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.37 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.41 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.91 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.93 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.72 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.89 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.35 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.65 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.04 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.71 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.18 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.81 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR7265383 | embryo | 3hA | 4.46 | MC |
| SRR2338867 | endosprem | control | 0.85 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.03 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.13 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.74 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.65 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.76 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.63 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.75 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.41 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR6417969 | leaf | H2O_control | 0.41 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.77 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.28 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.65 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.90 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.52 | MC |
| SRR5856927 | leaf | control | 1.11 | MC |
| SRR5856928 | leaf | control | 1.09 | MC |
| SRR5856929 | leaf | control | 1.01 | MC |
| SRR5856930 | leaf | salt | 0.31 | MC |
| SRR5856931 | leaf | salt | 0.40 | MC |
| SRR5856933 | leaf | control | 0.33 | MC |
| SRR5856934 | leaf | control | 0.85 | MC |
| SRR5856935 | leaf | control | 0.47 | MC |
| SRR5856936 | leaf | salt | 0.38 | MC |
| SRR5856938 | leaf | salt | 0.45 | MC |
| SRR6168973 | leaf | none (control) | 2.87 | MC |
| SRR6168974 | leaf | none (control) | 2.95 | MC |
| SRR6168975 | leaf | none (control) | 0.83 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR5110432 | panicle | Dawn | 1.43 | MC |
| SRR4947496 | root | control | 2.81 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.91 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.35 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.90 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.23 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.96 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.66 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.53 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.50 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.71 | MC |
| SRR5126147 | root | "mock,1_day" | 1.83 | MC |
| SRR5126148 | root | "mock,1_day" | 0.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126153 | root | "mock,7_days" | 3.21 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.81 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.72 | MC |
| SRR4947497 | root | control | 1.16 | MC |
| SRR4947501 | root | Al | 4.07 | MC |
| SRR4947505 | root | control | 4.42 | MC |
| SRR6441554 | seedling | wild_type | 1.61 | MC |
| SRR6441555 | seedling | wild_type | 0.43 | MC |
| SRR2154086 | seedling | wt | 3.18 | MC |
| SRR2154082 | seedling | wt | 1.66 | MC |
| SRR2154085 | seedling | wt | 3.51 | MC |
| SRR2154087 | seedling | wt | 2.49 | MC |
| SRR3098742 | seedling | wt | 0.63 | MC |
| SRR3098743 | seedling | wt | 0.94 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.56 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.51 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.42 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.15 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.20 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.86 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.31 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.56 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.91 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.14 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.23 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.77 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.66 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.85 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |