| SRR5560727 | caryopsis | wild_type | 1.26 | MC |
| SRR5560728 | caryopsis | wild_type | 0.29 | MC |
| SRR5560729 | caryopsis | wild_type | 1.64 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR4947495 | root | control | 0.88 | MC |
| SRR7265403 | coleoptile | 2dN | 0.50 | MC |
| SRR7265404 | coleoptile | 2dN | 0.95 | MC |
| SRR7265405 | coleoptile | 2dN | 1.06 | MC |
| SRR7265408 | coleoptile | 3dA | 0.40 | MC |
| SRR7265412 | coleoptile | 4dA | 0.67 | MC |
| SRR7265416 | coleoptile | 4dN | 0.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.38 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.03 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.81 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.07 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.25 | MC |
| SRR7265388 | embryo | 12hA | 1.33 | MC |
| SRR7265389 | embryo | 12hA | 0.92 | MC |
| SRR7265390 | embryo | 12hA | 2.42 | MC |
| SRR7265394 | embryo | 24hA | 0.64 | MC |
| SRR7265395 | embryo | 24hA | 0.60 | MC |
| SRR7265396 | embryo | 24hA | 0.70 | MC |
| SRR7265397 | embryo | 24hN | 1.11 | MC |
| SRR7265398 | embryo | 24hN | 0.90 | MC |
| SRR7265399 | embryo | 24hN | 2.08 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.42 | MC |
| SRR8060835 | leaf | wild_type | 1.27 | MC |
| SRR8060836 | leaf | wild_type | 0.69 | MC |
| SRR8060837 | leaf | wild_type | 0.27 | MC |
| SRR8240824 | leaf | wild_type | 1.76 | MC |
| SRR8240825 | leaf | wild_type | 1.74 | MC |
| SRR8240826 | leaf | wild_type | 1.86 | MC |
| SRR8240818 | leaf | wild_type | 0.75 | MC |
| SRR8240819 | leaf | wild_type | 1.26 | MC |
| SRR8240820 | leaf | wild_type | 0.99 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.65 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.45 | MC |
| SRR504365 | leaf | wt | 0.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.21 | MC |
| SRR6417968 | leaf | H2O_control | 1.10 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.68 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.42 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.40 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.64 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.67 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.57 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.49 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.20 | MC |
| SRR1213692 | leaf | wt | 0.43 | MC |
| SRR1213693 | leaf | wt | 0.30 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502088 | leaf | control | 0.47 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR5856927 | leaf | control | 0.66 | MC |
| SRR5856928 | leaf | control | 1.29 | MC |
| SRR5856929 | leaf | control | 0.63 | MC |
| SRR5856930 | leaf | salt | 0.73 | MC |
| SRR5856932 | leaf | salt | 1.71 | MC |
| SRR5856933 | leaf | control | 0.42 | MC |
| SRR5856934 | leaf | control | 0.69 | MC |
| SRR5856935 | leaf | control | 0.66 | MC |
| SRR5856936 | leaf | salt | 1.63 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.99 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.84 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.38 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.21 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.90 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.33 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168979 | leaf | none (control) | 1.34 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.53 | MC |
| SRR8582893 | panicle | PM | 0.23 | MC |
| SRR4947496 | root | control | 1.44 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110447 | panicle | Dusk | 0.51 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.88 | MC |
| SRR5126147 | root | "mock,1_day" | 1.37 | MC |
| SRR5126149 | root | "mock,1_day" | 0.78 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126153 | root | "mock,7_days" | 0.33 | MC |
| SRR5126157 | root | "mock,7_days" | 0.70 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126167 | root | "mock,14_days" | 2.27 | MC |
| SRR5126169 | root | "mock,14_days" | 0.53 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.96 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.83 | MC |
| SRR1213695 | root | wt | 0.21 | MC |
| SRR4947480 | root | control | 0.86 | MC |
| SRR4947484 | root | Al | 0.56 | MC |
| SRR4947485 | root | Al | 1.08 | MC |
| SRR4947488 | root | control | 1.59 | MC |
| SRR4947489 | root | control | 0.86 | MC |
| SRR4947492 | root | Al | 0.83 | MC |
| SRR4947493 | root | Al | 1.03 | MC |
| SRR4947497 | root | control | 1.38 | MC |
| SRR4947502 | root | control | 0.50 | MC |
| SRR4947503 | root | control | 0.76 | MC |
| SRR4947504 | root | control | 0.90 | MC |
| SRR4947505 | root | control | 1.29 | MC |
| SRR4947507 | root | Al | 1.11 | MC |
| SRR4947508 | root | Al | 1.05 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.31 | MC |
| SRR6502108 | root | control | 1.22 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR6441555 | seedling | wild_type | 0.25 | MC |
| SRR2154086 | seedling | wt | 1.67 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154085 | seedling | wt | 0.72 | MC |
| SRR2154087 | seedling | wt | 0.93 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.12 | MC |
| SRR358792 | seedling | wt | 1.10 | MC |
| SRR358793 | seedling | wt | 3.13 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.17 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.56 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.54 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.33 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.71 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.14 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.20 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.68 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.32 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.93 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.47 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.36 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.18 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.21 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.98 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.62 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.24 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.99 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.06 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.85 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.29 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.07 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.72 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.35 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.14 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.78 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |