| SRR6320473 | carpel | wt | 1.42 | MC |
| SRR6320498 | carpel | wt | 1.64 | MC |
| SRR5560728 | caryopsis | wild_type | 3.91 | MC |
| SRR5560729 | caryopsis | wild_type | 3.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.12 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR2338866 | endosprem | control | 1.48 | MC |
| SRR2338867 | endosprem | control | 0.76 | MC |
| SRR2338868 | endosprem | high_temperature | 0.68 | MC |
| SRR2338869 | endosprem | high_temperature | 1.32 | MC |
| SRR976168 | flag_leaf | wild_type | 0.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.59 | MC |
| SRR1213691 | flower | wt | 0.98 | MC |
| SRR8240825 | leaf | wild_type | 1.79 | MC |
| SRR8240818 | leaf | wild_type | 1.85 | MC |
| SRR8240819 | leaf | wild_type | 1.82 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.23 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.20 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.43 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.60 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.02 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.20 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.42 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.39 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.60 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.60 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.83 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.29 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.45 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.24 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.49 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.50 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.50 | MC |
| SRR1761528 | leaf | drought | 1.49 | MC |
| SRR1761529 | leaf | drought | 1.50 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.11 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.24 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.14 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.11 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.32 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.06 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.27 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.93 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.95 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.76 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.18 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.65 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.22 | MC |
| SRR5856929 | leaf | control | 0.21 | MC |
| SRR5856933 | leaf | control | 0.30 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.99 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.26 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.46 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.71 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.55 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.98 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.75 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.99 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.43 | MC |
| SRR6168973 | leaf | none (control) | 0.37 | MC |
| SRR6168974 | leaf | none (control) | 0.35 | MC |
| SRR6168975 | leaf | none (control) | 0.51 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.02 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.78 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR8582888 | panicle | AM | 2.98 | MC |
| SRR8582889 | panicle | AM | 1.47 | MC |
| SRR5110429 | panicle | Dawn | 3.73 | MC |
| SRR5110430 | panicle | Dawn | 3.83 | MC |
| SRR5110431 | panicle | Dawn | 2.90 | MC |
| SRR5110432 | panicle | Dawn | 2.19 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.93 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.01 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.93 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.17 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.00 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.16 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.15 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.10 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.83 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.15 | MC |
| SRR5110447 | panicle | Dusk | 4.01 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.38 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.49 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.65 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.98 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.22 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.05 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.59 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.00 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR4947498 | root | Al | 0.73 | MC |
| SRR4947507 | root | Al | 0.54 | MC |
| SRR6502094 | root | control | 2.97 | MC |
| SRR6502095 | root | control | 4.47 | MC |
| SRR6502096 | root | control | 4.06 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR6441554 | seedling | wild_type | 2.38 | MC |
| SRR6441555 | seedling | wild_type | 2.38 | MC |
| SRR2154086 | seedling | wt | 2.72 | MC |
| SRR2154085 | seedling | wt | 3.34 | MC |
| SRR2154087 | seedling | wt | 3.58 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.99 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.23 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.72 | MC |
| SRR358791 | seedling | wt | 7.32 | MC |
| SRR358792 | seedling | wt | 7.33 | MC |
| SRR358793 | seedling | wt | 3.90 | MC |
| SRR358794 | seedling | wt | 4.20 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.66 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.86 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.11 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.03 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.36 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.11 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.83 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.60 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.35 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.41 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.81 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.84 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.20 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.35 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.09 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.36 | MC |