| SRR4457249 | 2nd_leaf | DAH4 | 5.48 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.57 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.38 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.67 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.34 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.32 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.07 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.89 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.94 | MC |
| SRR3745125 | anther | wt | 4.78 | MC |
| SRR3745127 | anther | wt | 4.64 | MC |
| SRR6320473 | carpel | wt | 4.74 | MC |
| SRR6320498 | carpel | wt | 2.48 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.32 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.01 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.65 | MC |
| SRR4947495 | root | control | 2.58 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.98 | MC |
| SRR7265400 | coleoptile | 2dA | 1.39 | MC |
| SRR7265401 | coleoptile | 2dA | 3.02 | MC |
| SRR7265402 | coleoptile | 2dA | 2.41 | MC |
| SRR7265406 | coleoptile | 3dA | 2.63 | MC |
| SRR7265409 | coleoptile | 3dN | 3.55 | MC |
| SRR7265410 | coleoptile | 3dN | 2.14 | MC |
| SRR7265413 | coleoptile | 4dA | 4.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.33 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.35 | MC |
| SRR7265391 | embryo | 12hN | 4.48 | MC |
| SRR7265396 | embryo | 24hA | 4.18 | MC |
| SRR2338869 | endosprem | high_temperature | 0.67 | MC |
| SRR976168 | flag_leaf | wild_type | 1.53 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.52 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.54 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.05 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.89 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.09 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.94 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.81 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.36 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.47 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.09 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.09 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.00 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.07 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.74 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.91 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.55 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.92 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.38 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.51 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.65 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.27 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.30 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.47 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.66 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.72 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.28 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.12 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.19 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.54 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.64 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.60 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.03 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.84 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.77 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.00 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.29 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.28 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.28 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.28 | MC |
| SRR1761528 | leaf | drought | 5.28 | MC |
| SRR1761529 | leaf | drought | 2.28 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.44 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.95 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.43 | MC |
| SRR6417967 | leaf | H2O_control | 3.72 | MC |
| SRR6417968 | leaf | H2O_control | 2.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.78 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.76 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.39 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.91 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.09 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.59 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.89 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.14 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.82 | MC |
| SRR1213693 | leaf | wt | 1.43 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.46 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.75 | MC |
| SRR6502088 | leaf | control | 2.98 | MC |
| SRR6502089 | leaf | control | 3.87 | MC |
| SRR6502090 | leaf | control | 3.15 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502100 | leaf | control | 3.91 | MC |
| SRR6502101 | leaf | control | 3.65 | MC |
| SRR6502102 | leaf | control | 2.19 | MC |
| SRR5856927 | leaf | control | 0.76 | MC |
| SRR5856928 | leaf | control | 0.60 | MC |
| SRR5856929 | leaf | control | 1.91 | MC |
| SRR5856930 | leaf | salt | 0.81 | MC |
| SRR5856931 | leaf | salt | 0.51 | MC |
| SRR5856932 | leaf | salt | 0.63 | MC |
| SRR5856935 | leaf | control | 2.35 | MC |
| SRR5856936 | leaf | salt | 0.28 | MC |
| SRR5856937 | leaf | salt | 0.46 | MC |
| SRR5856938 | leaf | salt | 0.92 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.30 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.91 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.06 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.40 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.20 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.65 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.32 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.61 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.08 | MC |
| SRR6168979 | leaf | none (control) | 1.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.76 | MC |
| SRR5110429 | panicle | Dawn | 1.84 | MC |
| SRR5110430 | panicle | Dawn | 2.92 | MC |
| SRR5110431 | panicle | Dawn | 2.62 | MC |
| SRR5110432 | panicle | Dawn | 1.53 | MC |
| SRR4947496 | root | control | 3.79 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.05 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.16 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.07 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.57 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.27 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.25 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.51 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.98 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.41 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.12 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.03 | MC |
| SRR5110446 | panicle | Dusk | 2.73 | MC |
| SRR5110447 | panicle | Dusk | 3.61 | MC |
| SRR5110448 | panicle | Dusk | 3.47 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.98 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.94 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.10 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.86 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.67 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.30 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.16 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.23 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.55 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.30 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.30 | MC |
| SRR1633182 | panicle | WT | 3.66 | MC |
| SRR1633185 | panicle | WT | 4.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.40 | MC |
| SRR5126147 | root | "mock,1_day" | 1.35 | MC |
| SRR5126148 | root | "mock,1_day" | 3.50 | MC |
| SRR5126149 | root | "mock,1_day" | 1.22 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.82 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.52 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.11 | MC |
| SRR1213694 | root | wt | 2.00 | MC |
| SRR1213695 | root | wt | 1.22 | MC |
| SRR4947478 | root | control | 2.46 | MC |
| SRR4947479 | root | control | 2.92 | MC |
| SRR4947481 | root | control | 5.01 | MC |
| SRR4947482 | root | Al | 1.38 | MC |
| SRR4947483 | root | Al | 0.68 | MC |
| SRR4947484 | root | Al | 2.93 | MC |
| SRR4947485 | root | Al | 0.91 | MC |
| SRR4947487 | root | control | 1.46 | MC |
| SRR4947488 | root | control | 3.50 | MC |
| SRR4947489 | root | control | 2.60 | MC |
| SRR4947490 | root | Al | 2.30 | MC |
| SRR4947492 | root | Al | 4.44 | MC |
| SRR4947493 | root | Al | 3.61 | MC |
| SRR4947494 | root | control | 1.81 | MC |
| SRR4947497 | root | control | 1.93 | MC |
| SRR4947499 | root | Al | 3.31 | MC |
| SRR4947500 | root | Al | 4.12 | MC |
| SRR4947503 | root | control | 2.73 | MC |
| SRR4947504 | root | control | 1.53 | MC |
| SRR4947505 | root | control | 2.71 | MC |
| SRR4947506 | root | Al | 1.59 | MC |
| SRR4947507 | root | Al | 4.96 | MC |
| SRR4947508 | root | Al | 4.25 | MC |
| SRR4947509 | root | Al | 0.99 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.68 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.97 | MC |
| SRR6502094 | root | control | 2.52 | MC |
| SRR6502095 | root | control | 2.52 | MC |
| SRR6502096 | root | control | 2.55 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502106 | root | control | 3.79 | MC |
| SRR6502107 | root | control | 1.32 | MC |
| SRR6502108 | root | control | 3.23 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.65 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.92 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.85 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.51 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.79 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.25 | MC |
| SRR2154086 | seedling | wt | 0.73 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154083 | seedling | wt | 0.41 | MC |
| SRR2154087 | seedling | wt | 1.21 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.34 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.44 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.59 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.62 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.55 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.04 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.68 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.63 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.02 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.80 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.14 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.26 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.49 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.29 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.75 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.93 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.81 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.55 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.85 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.49 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.38 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.08 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.36 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.44 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.53 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 12.33 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.07 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.86 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.32 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.22 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.08 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.68 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.06 | MC |