| SRR358798 | callus | wt | 4.25 | MC |
| SRR5560727 | caryopsis | wild_type | 1.00 | MC |
| SRR5560728 | caryopsis | wild_type | 0.71 | MC |
| SRR5560729 | caryopsis | wild_type | 1.45 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR7265400 | coleoptile | 2dA | 0.42 | MC |
| SRR7265403 | coleoptile | 2dN | 0.96 | MC |
| SRR7265404 | coleoptile | 2dN | 0.94 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265407 | coleoptile | 3dA | 0.36 | MC |
| SRR7265409 | coleoptile | 3dN | 1.16 | MC |
| SRR7265410 | coleoptile | 3dN | 0.76 | MC |
| SRR7265411 | coleoptile | 3dN | 0.71 | MC |
| SRR7265415 | coleoptile | 4dN | 2.46 | MC |
| SRR7265416 | coleoptile | 4dN | 1.12 | MC |
| SRR7265417 | coleoptile | 4dN | 1.10 | MC |
| SRR7265383 | embryo | 3hA | 0.45 | MC |
| SRR7265385 | embryo | 3hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.36 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 0.83 | MC |
| SRR7265389 | embryo | 12hA | 1.16 | MC |
| SRR7265390 | embryo | 12hA | 1.09 | MC |
| SRR7265391 | embryo | 12hN | 0.94 | MC |
| SRR7265392 | embryo | 12hN | 1.56 | MC |
| SRR7265393 | embryo | 12hN | 1.21 | MC |
| SRR7265395 | embryo | 24hA | 0.82 | MC |
| SRR7265396 | embryo | 24hA | 0.97 | MC |
| SRR7265397 | embryo | 24hN | 1.05 | MC |
| SRR7265398 | embryo | 24hN | 1.18 | MC |
| SRR7265399 | embryo | 24hN | 0.66 | MC |
| SRR2338868 | endosprem | high_temperature | 2.31 | MC |
| SRR2338869 | endosprem | high_temperature | 1.21 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.01 | MC |
| SRR1213691 | flower | wt | 2.96 | MC |
| SRR5856929 | leaf | control | 0.27 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5110429 | panicle | Dawn | 0.47 | MC |
| SRR5110431 | panicle | Dawn | 0.94 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.01 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.82 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.02 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.61 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.06 | MC |
| SRR5110445 | panicle | Dusk | 2.52 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.83 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.65 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.56 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.67 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.67 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.50 | MC |
| SRR5126147 | root | "mock,1_day" | 1.97 | MC |
| SRR5126148 | root | "mock,1_day" | 0.81 | MC |
| SRR5126149 | root | "mock,1_day" | 1.79 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.05 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126153 | root | "mock,7_days" | 0.69 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 1.07 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.90 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.27 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.75 | MC |
| SRR5126165 | root | "mock,14_days" | 1.73 | MC |
| SRR5126167 | root | "mock,14_days" | 0.71 | MC |
| SRR5126169 | root | "mock,14_days" | 1.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.87 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.82 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.32 | MC |
| SRR4947492 | root | Al | 1.24 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.37 | MC |
| SRR6441554 | seedling | wild_type | 0.55 | MC |
| SRR2154084 | seedling | wt | 0.40 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.49 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.45 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.45 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.68 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.69 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.71 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.71 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.53 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.04 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.23 | MC |