| SRR4457253 | 2nd_leaf | DAH12 | 0.84 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.02 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.31 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.94 | MC |
| SRR6320473 | carpel | wt | 1.57 | MC |
| SRR5560728 | caryopsis | wild_type | 0.68 | MC |
| SRR5560729 | caryopsis | wild_type | 0.52 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.12 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR4947495 | root | control | 2.96 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.85 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.55 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.36 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.80 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.89 | MC |
| SRR2338867 | endosprem | control | 2.00 | MC |
| SRR2338868 | endosprem | high_temperature | 2.62 | MC |
| SRR2338869 | endosprem | high_temperature | 1.94 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.42 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.41 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.90 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.18 | MC |
| SRR8060837 | leaf | wild_type | 0.44 | MC |
| SRR8240824 | leaf | wild_type | 0.92 | MC |
| SRR8240825 | leaf | wild_type | 0.55 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.87 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.84 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR6417967 | leaf | H2O_control | 0.62 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.44 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.45 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.91 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.56 | MC |
| SRR1213693 | leaf | wt | 0.56 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.74 | MC |
| SRR6502090 | leaf | control | 1.25 | MC |
| SRR5856928 | leaf | control | 2.19 | MC |
| SRR5856929 | leaf | control | 1.67 | MC |
| SRR5856930 | leaf | salt | 1.24 | MC |
| SRR5856932 | leaf | salt | 1.21 | MC |
| SRR5856933 | leaf | control | 2.04 | MC |
| SRR5856935 | leaf | control | 2.31 | MC |
| SRR5856936 | leaf | salt | 1.28 | MC |
| SRR5856937 | leaf | salt | 1.61 | MC |
| SRR5856938 | leaf | salt | 1.54 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.72 | MC |
| SRR6168974 | leaf | none (control) | 0.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR5110432 | panicle | Dawn | 0.77 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.46 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.45 | MC |
| SRR5110447 | panicle | Dusk | 0.74 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.31 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.11 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.16 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.07 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.49 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.79 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.09 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.44 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.52 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.26 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.00 | MC |
| SRR5126165 | root | "mock,14_days" | 1.85 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.77 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.18 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.02 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.05 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR1213694 | root | wt | 1.68 | MC |
| SRR1213695 | root | wt | 0.41 | MC |
| SRR4947479 | root | control | 2.30 | MC |
| SRR4947481 | root | control | 0.73 | MC |
| SRR4947482 | root | Al | 0.88 | MC |
| SRR4947483 | root | Al | 1.61 | MC |
| SRR4947484 | root | Al | 0.72 | MC |
| SRR4947490 | root | Al | 0.96 | MC |
| SRR4947491 | root | Al | 1.56 | MC |
| SRR4947493 | root | Al | 0.76 | MC |
| SRR4947497 | root | control | 0.69 | MC |
| SRR4947498 | root | Al | 1.73 | MC |
| SRR4947499 | root | Al | 1.58 | MC |
| SRR4947501 | root | Al | 1.23 | MC |
| SRR4947502 | root | control | 1.33 | MC |
| SRR4947503 | root | control | 0.77 | MC |
| SRR4947504 | root | control | 0.86 | MC |
| SRR4947506 | root | Al | 1.38 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.14 | MC |
| SRR6502094 | root | control | 3.67 | MC |
| SRR6502095 | root | control | 3.15 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.60 | MC |
| SRR6502106 | root | control | 1.40 | MC |
| SRR2154086 | seedling | wt | 1.25 | MC |
| SRR2154083 | seedling | wt | 3.36 | MC |
| SRR3098741 | seedling | wt | 0.44 | MC |
| SRR3098742 | seedling | wt | 0.53 | MC |
| SRR3098743 | seedling | wt | 0.90 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.80 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.79 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.42 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.85 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.08 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.63 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.11 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.21 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.68 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.57 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.64 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.67 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.83 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.98 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.13 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.58 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.23 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.66 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.14 | MC |