| SRR4457251 | 2nd_leaf | DAH4 | 0.39 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR3745125 | anther | wt | 1.72 | MC |
| SRR3745126 | anther | wt | 2.54 | MC |
| SRR3745127 | anther | wt | 1.24 | MC |
| SRR358798 | callus | wt | 0.98 | MC |
| SRR5560727 | caryopsis | wild_type | 1.47 | MC |
| SRR5560728 | caryopsis | wild_type | 1.52 | MC |
| SRR5560729 | caryopsis | wild_type | 2.40 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.07 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR7265400 | coleoptile | 2dA | 0.43 | MC |
| SRR7265401 | coleoptile | 2dA | 0.42 | MC |
| SRR7265403 | coleoptile | 2dN | 2.98 | MC |
| SRR7265404 | coleoptile | 2dN | 2.09 | MC |
| SRR7265405 | coleoptile | 2dN | 1.83 | MC |
| SRR7265407 | coleoptile | 3dA | 0.45 | MC |
| SRR7265409 | coleoptile | 3dN | 3.61 | MC |
| SRR7265410 | coleoptile | 3dN | 3.01 | MC |
| SRR7265411 | coleoptile | 3dN | 3.01 | MC |
| SRR7265412 | coleoptile | 4dA | 0.73 | MC |
| SRR7265413 | coleoptile | 4dA | 0.97 | MC |
| SRR7265414 | coleoptile | 4dA | 0.67 | MC |
| SRR7265417 | coleoptile | 4dN | 3.07 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.40 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.45 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.01 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.49 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265376 | embryo | 1hA | 2.61 | MC |
| SRR7265377 | embryo | 1hA | 3.61 | MC |
| SRR7265378 | embryo | 1hA | 2.42 | MC |
| SRR7265379 | embryo | 1hN | 1.77 | MC |
| SRR7265380 | embryo | 1hN | 1.52 | MC |
| SRR7265381 | embryo | 1hN | 1.69 | MC |
| SRR7265382 | embryo | 3hA | 2.37 | MC |
| SRR7265383 | embryo | 3hA | 1.01 | MC |
| SRR7265384 | embryo | 3hA | 1.40 | MC |
| SRR7265385 | embryo | 3hN | 2.41 | MC |
| SRR7265386 | embryo | 3hN | 1.87 | MC |
| SRR7265387 | embryo | 3hN | 1.42 | MC |
| SRR7265389 | embryo | 12hA | 0.55 | MC |
| SRR7265390 | embryo | 12hA | 0.67 | MC |
| SRR7265391 | embryo | 12hN | 1.59 | MC |
| SRR7265392 | embryo | 12hN | 0.75 | MC |
| SRR7265393 | embryo | 12hN | 1.16 | MC |
| SRR7265394 | embryo | 24hA | 0.68 | MC |
| SRR7265395 | embryo | 24hA | 0.53 | MC |
| SRR7265397 | embryo | 24hN | 1.74 | MC |
| SRR7265398 | embryo | 24hN | 1.74 | MC |
| SRR7265399 | embryo | 24hN | 1.12 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.49 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.40 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.72 | MC |
| SRR1213691 | flower | wt | 0.96 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.89 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.51 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.53 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.57 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.28 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.48 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.23 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR6417967 | leaf | H2O_control | 0.45 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR1213693 | leaf | wt | 0.75 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6168973 | leaf | none (control) | 0.68 | MC |
| SRR6168975 | leaf | none (control) | 0.87 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR5110429 | panicle | Dawn | 1.03 | MC |
| SRR5110430 | panicle | Dawn | 1.40 | MC |
| SRR5110431 | panicle | Dawn | 1.96 | MC |
| SRR5110432 | panicle | Dawn | 0.41 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.13 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.61 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.23 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.88 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.84 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.50 | MC |
| SRR5110445 | panicle | Dusk | 0.92 | MC |
| SRR5110446 | panicle | Dusk | 0.35 | MC |
| SRR5110447 | panicle | Dusk | 0.42 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.74 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.02 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.13 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.03 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.11 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.63 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.31 | MC |
| SRR1633182 | panicle | WT | 0.64 | MC |
| SRR1633185 | panicle | WT | 1.94 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 1.03 | MC |
| SRR5126148 | root | "mock,1_day" | 0.53 | MC |
| SRR5126149 | root | "mock,1_day" | 0.49 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.06 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.92 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.37 | MC |
| SRR5126153 | root | "mock,7_days" | 0.85 | MC |
| SRR5126155 | root | "mock,7_days" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 0.90 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.06 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.02 | MC |
| SRR5126165 | root | "mock,14_days" | 1.04 | MC |
| SRR5126167 | root | "mock,14_days" | 0.75 | MC |
| SRR5126169 | root | "mock,14_days" | 0.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.08 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.50 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.26 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR1213694 | root | wt | 1.94 | MC |
| SRR1213695 | root | wt | 1.34 | MC |
| SRR4947498 | root | Al | 0.56 | MC |
| SRR4947507 | root | Al | 0.67 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.90 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.36 | MC |
| SRR6502106 | root | control | 0.34 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.31 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.24 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.20 | MC |
| SRR2154084 | seedling | wt | 0.35 | MC |
| SRR2154085 | seedling | wt | 0.69 | MC |
| SRR3098741 | seedling | wt | 0.31 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.47 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.26 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.37 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |