| SRR4457249 | 2nd_leaf | DAH4 | 0.80 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.98 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.08 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR3745127 | anther | wt | 0.52 | MC |
| SRR358795 | callus | wt | 1.22 | MC |
| SRR6320498 | carpel | wt | 2.19 | MC |
| SRR5560727 | caryopsis | wild_type | 1.25 | MC |
| SRR5560728 | caryopsis | wild_type | 0.94 | MC |
| SRR5560729 | caryopsis | wild_type | 0.74 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR7265400 | coleoptile | 2dA | 0.36 | MC |
| SRR7265401 | coleoptile | 2dA | 0.45 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265388 | embryo | 12hA | 0.74 | MC |
| SRR7265389 | embryo | 12hA | 0.45 | MC |
| SRR7265390 | embryo | 12hA | 0.50 | MC |
| SRR7265393 | embryo | 12hN | 0.54 | MC |
| SRR7265395 | embryo | 24hA | 0.94 | MC |
| SRR7265396 | embryo | 24hA | 0.76 | MC |
| SRR7265398 | embryo | 24hN | 0.48 | MC |
| SRR7265399 | embryo | 24hN | 0.53 | MC |
| SRR2338869 | endosprem | high_temperature | 0.72 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.37 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.44 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.40 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.37 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.52 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.52 | MC |
| SRR1761530 | leaf | control | 0.51 | MC |
| SRR504365 | leaf | wt | 0.97 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.32 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.54 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502102 | leaf | control | 0.38 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.19 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.15 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.96 | MC |
| SRR6168973 | leaf | none (control) | 0.83 | MC |
| SRR6168974 | leaf | none (control) | 0.69 | MC |
| SRR6168975 | leaf | none (control) | 1.07 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR6168981 | leaf | none (control) | 0.43 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.11 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.29 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR8582888 | panicle | AM | 0.61 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR8582890 | panicle | AM | 0.22 | MC |
| SRR8582891 | panicle | PM | 1.12 | MC |
| SRR8582892 | panicle | PM | 2.26 | MC |
| SRR8582893 | panicle | PM | 1.05 | MC |
| SRR1633182 | panicle | WT | 0.47 | MC |
| SRR1633185 | panicle | WT | 0.69 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.33 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.57 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.62 | MC |
| SRR5126157 | root | "mock,7_days" | 0.78 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 0.58 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.01 | MC |
| SRR1213694 | root | wt | 0.25 | MC |
| SRR1213695 | root | wt | 0.21 | MC |
| SRR4947497 | root | control | 0.66 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.79 | MC |
| SRR6502094 | root | control | 0.47 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502106 | root | control | 0.40 | MC |
| SRR6502107 | root | control | 0.47 | MC |
| SRR6502108 | root | control | 0.40 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.20 | MC |
| SRR6441554 | seedling | wild_type | 0.34 | MC |
| SRR6441555 | seedling | wild_type | 0.28 | MC |
| SRR2154086 | seedling | wt | 0.67 | MC |
| SRR2154082 | seedling | wt | 0.33 | MC |
| SRR2154085 | seedling | wt | 0.48 | MC |
| SRR2154087 | seedling | wt | 0.34 | MC |
| SRR3098741 | seedling | wt | 1.25 | MC |
| SRR3098742 | seedling | wt | 1.23 | MC |
| SRR3098743 | seedling | wt | 0.94 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.00 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.63 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.05 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.73 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.01 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.04 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.23 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.94 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.60 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.84 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.71 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.77 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.52 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.65 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.46 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.53 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.98 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.90 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.83 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.53 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.33 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |