| SRR4457249 | 2nd_leaf | DAH4 | 0.92 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.79 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.47 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.24 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.68 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.95 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.63 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.84 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.45 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.46 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.87 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.23 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.98 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.08 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.16 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.52 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.83 | MC |
| SRR358797 | callus | wt | 1.01 | MC |
| SRR5560728 | caryopsis | wild_type | 0.28 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.61 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR7265401 | coleoptile | 2dA | 0.33 | MC |
| SRR7265402 | coleoptile | 2dA | 0.54 | MC |
| SRR7265405 | coleoptile | 2dN | 0.28 | MC |
| SRR7265406 | coleoptile | 3dA | 0.36 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.43 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.05 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265388 | embryo | 12hA | 1.15 | MC |
| SRR7265389 | embryo | 12hA | 0.85 | MC |
| SRR7265390 | embryo | 12hA | 1.59 | MC |
| SRR7265391 | embryo | 12hN | 0.64 | MC |
| SRR7265393 | embryo | 12hN | 0.84 | MC |
| SRR7265394 | embryo | 24hA | 1.90 | MC |
| SRR7265395 | embryo | 24hA | 1.68 | MC |
| SRR7265396 | embryo | 24hA | 0.98 | MC |
| SRR2338869 | endosprem | high_temperature | 0.79 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.93 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.81 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.63 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.41 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.88 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.06 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.39 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.94 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.05 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.53 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.88 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.98 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.71 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.90 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.11 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.69 | MC |
| SRR8060836 | leaf | wild_type | 0.54 | MC |
| SRR8240824 | leaf | wild_type | 0.46 | MC |
| SRR8240825 | leaf | wild_type | 0.58 | MC |
| SRR8240818 | leaf | wild_type | 0.54 | MC |
| SRR8240819 | leaf | wild_type | 1.72 | MC |
| SRR8240820 | leaf | wild_type | 1.87 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.90 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.66 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.99 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.67 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.73 | MC |
| SRR1761528 | leaf | drought | 0.70 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.45 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.65 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR1213692 | leaf | wt | 0.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.98 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.55 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.10 | MC |
| SRR6502089 | leaf | control | 1.18 | MC |
| SRR6502090 | leaf | control | 1.01 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.36 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.12 | MC |
| SRR6502100 | leaf | control | 2.38 | MC |
| SRR6502101 | leaf | control | 1.98 | MC |
| SRR6502102 | leaf | control | 1.87 | MC |
| SRR5856927 | leaf | control | 0.25 | MC |
| SRR5856933 | leaf | control | 0.22 | MC |
| SRR6168973 | leaf | none (control) | 0.94 | MC |
| SRR6168974 | leaf | none (control) | 0.77 | MC |
| SRR6168975 | leaf | none (control) | 1.89 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR6168981 | leaf | none (control) | 0.56 | MC |
| SRR4947496 | root | control | 1.75 | MC |
| SRR5110445 | panicle | Dusk | 0.62 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.24 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.26 | MC |
| SRR1633182 | panicle | WT | 2.24 | MC |
| SRR1633185 | panicle | WT | 2.13 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.50 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.01 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.89 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.46 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126148 | root | "mock,1_day" | 1.05 | MC |
| SRR5126149 | root | "mock,1_day" | 0.73 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.15 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.95 | MC |
| SRR5126153 | root | "mock,7_days" | 0.54 | MC |
| SRR5126157 | root | "mock,7_days" | 0.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.31 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.85 | MC |
| SRR5126165 | root | "mock,14_days" | 0.92 | MC |
| SRR5126167 | root | "mock,14_days" | 1.90 | MC |
| SRR5126169 | root | "mock,14_days" | 1.18 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.15 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.57 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213694 | root | wt | 0.39 | MC |
| SRR1213695 | root | wt | 3.16 | MC |
| SRR4947480 | root | control | 1.72 | MC |
| SRR4947481 | root | control | 1.26 | MC |
| SRR4947484 | root | Al | 0.73 | MC |
| SRR4947485 | root | Al | 1.46 | MC |
| SRR4947488 | root | control | 1.47 | MC |
| SRR4947489 | root | control | 1.04 | MC |
| SRR4947492 | root | Al | 1.68 | MC |
| SRR4947493 | root | Al | 1.22 | MC |
| SRR4947504 | root | control | 2.06 | MC |
| SRR4947505 | root | control | 2.08 | MC |
| SRR4947508 | root | Al | 1.04 | MC |
| SRR4947509 | root | Al | 1.78 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502094 | root | control | 1.01 | MC |
| SRR6502096 | root | control | 0.50 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.81 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.95 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.82 | MC |
| SRR6502107 | root | control | 1.12 | MC |
| SRR6502108 | root | control | 0.66 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.59 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.71 | MC |
| SRR2154086 | seedling | wt | 1.25 | MC |
| SRR2154083 | seedling | wt | 0.37 | MC |
| SRR2154085 | seedling | wt | 0.83 | MC |
| SRR3098741 | seedling | wt | 1.82 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR3098743 | seedling | wt | 0.36 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.70 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.38 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.88 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.45 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.78 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.77 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.41 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.82 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.61 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.41 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.10 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.33 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.38 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.91 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.17 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.11 | MC |