| SRR358796 | callus | wt | 1.12 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.27 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.40 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265376 | embryo | 1hA | 0.84 | MC |
| SRR7265377 | embryo | 1hA | 1.15 | MC |
| SRR7265378 | embryo | 1hA | 1.17 | MC |
| SRR7265379 | embryo | 1hN | 1.22 | MC |
| SRR7265380 | embryo | 1hN | 1.23 | MC |
| SRR7265381 | embryo | 1hN | 1.08 | MC |
| SRR7265382 | embryo | 3hA | 1.95 | MC |
| SRR7265383 | embryo | 3hA | 1.78 | MC |
| SRR7265384 | embryo | 3hA | 2.28 | MC |
| SRR7265385 | embryo | 3hN | 1.17 | MC |
| SRR7265386 | embryo | 3hN | 0.84 | MC |
| SRR7265387 | embryo | 3hN | 0.98 | MC |
| SRR7265388 | embryo | 12hA | 0.48 | MC |
| SRR7265389 | embryo | 12hA | 0.78 | MC |
| SRR7265390 | embryo | 12hA | 0.47 | MC |
| SRR7265392 | embryo | 12hN | 0.54 | MC |
| SRR7265393 | embryo | 12hN | 0.47 | MC |
| SRR7265394 | embryo | 24hA | 0.52 | MC |
| SRR7265395 | embryo | 24hA | 0.85 | MC |
| SRR7265398 | embryo | 24hN | 0.58 | MC |
| SRR7265399 | embryo | 24hN | 0.47 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.77 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.80 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.35 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.56 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.72 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.89 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.64 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.02 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.19 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.78 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.80 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.87 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.16 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.65 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.57 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.90 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.34 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.58 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.81 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.73 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.81 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.73 | MC |
| SRR1761528 | leaf | drought | 0.81 | MC |
| SRR1761529 | leaf | drought | 1.73 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.17 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.76 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.72 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.47 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.73 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.04 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.92 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.97 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.99 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6168981 | leaf | none (control) | 0.37 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.49 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.24 | MC |
| SRR8582888 | panicle | AM | 0.36 | MC |
| SRR8582889 | panicle | AM | 0.19 | MC |
| SRR5110432 | panicle | Dawn | 0.45 | MC |
| SRR5110446 | panicle | Dusk | 0.34 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.87 | MC |
| SRR1633185 | panicle | WT | 2.51 | MC |
| SRR5126148 | root | "mock,1_day" | 0.33 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.87 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.27 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.11 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.12 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.65 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.48 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.99 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.98 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.74 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.14 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.08 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.21 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.98 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.50 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.12 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.64 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.19 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.14 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.86 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.11 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.58 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.76 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.81 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.54 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.40 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.61 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.52 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.40 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.15 | MC |