| SRR358795 | callus | wt | 1.65 | MC |
| SRR358796 | callus | wt | 1.62 | MC |
| SRR358797 | callus | wt | 2.43 | MC |
| SRR358798 | callus | wt | 2.63 | MC |
| SRR5560727 | caryopsis | wild_type | 0.79 | MC |
| SRR5560728 | caryopsis | wild_type | 1.19 | MC |
| SRR5560729 | caryopsis | wild_type | 1.37 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.87 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR2338866 | endosprem | control | 1.67 | MC |
| SRR976168 | flag_leaf | wild_type | 1.22 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.78 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.72 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.45 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.23 | MC |
| SRR1213691 | flower | wt | 2.31 | MC |
| SRR8060835 | leaf | wild_type | 0.33 | MC |
| SRR8060836 | leaf | wild_type | 0.64 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240819 | leaf | wild_type | 0.54 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.32 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.06 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.98 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.85 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.89 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.40 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.96 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.27 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.41 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.83 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.42 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.27 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.41 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.83 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.42 | MC |
| SRR1761528 | leaf | drought | 1.27 | MC |
| SRR1761529 | leaf | drought | 1.41 | MC |
| SRR1761530 | leaf | control | 2.83 | MC |
| SRR1761531 | leaf | control | 2.42 | MC |
| SRR504365 | leaf | wt | 1.04 | MC |
| SRR6417967 | leaf | H2O_control | 0.66 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.60 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.66 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.07 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.31 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6502088 | leaf | control | 0.41 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.43 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.53 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.72 | MC |
| SRR6502100 | leaf | control | 2.72 | MC |
| SRR6502101 | leaf | control | 1.96 | MC |
| SRR6502102 | leaf | control | 2.27 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.29 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.37 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.48 | MC |
| SRR6168974 | leaf | none (control) | 0.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR8582891 | panicle | PM | 0.54 | MC |
| SRR8582892 | panicle | PM | 0.78 | MC |
| SRR8582893 | panicle | PM | 0.75 | MC |
| SRR5110429 | panicle | Dawn | 1.45 | MC |
| SRR5110431 | panicle | Dawn | 0.96 | MC |
| SRR5110432 | panicle | Dawn | 0.86 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.97 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.58 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.34 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.37 | MC |
| SRR5110445 | panicle | Dusk | 0.53 | MC |
| SRR5110446 | panicle | Dusk | 0.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.33 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.54 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.94 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.67 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.09 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.32 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502106 | root | control | 1.20 | MC |
| SRR6502107 | root | control | 1.25 | MC |
| SRR6502108 | root | control | 0.80 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.94 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.78 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.36 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.58 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.31 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.54 | MC |
| SRR6441554 | seedling | wild_type | 1.11 | MC |
| SRR6441555 | seedling | wild_type | 1.96 | MC |
| SRR2154086 | seedling | wt | 1.20 | MC |
| SRR2154085 | seedling | wt | 4.14 | MC |
| SRR2154087 | seedling | wt | 1.98 | MC |
| SRR3098741 | seedling | wt | 2.42 | MC |
| SRR3098742 | seedling | wt | 1.82 | MC |
| SRR3098743 | seedling | wt | 1.95 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.35 | MC |
| SRR1944583 | seedling | no_treatment | 3.76 | MC |
| SRR358793 | seedling | wt | 1.08 | MC |
| SRR358794 | seedling | wt | 1.69 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.43 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.80 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.72 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.55 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.35 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.37 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.76 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.02 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.98 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.24 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.05 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.03 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.24 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.11 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.90 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.26 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.18 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.16 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.72 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.15 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.26 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.79 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.31 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.09 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.70 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.03 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.16 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.07 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.40 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.60 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.39 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.77 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.77 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.05 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.76 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.00 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.91 | MC |