| SRR4457257 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.40 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.61 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.21 | MC |
| SRR358797 | callus | wt | 1.28 | MC |
| SRR358798 | callus | wt | 1.54 | MC |
| SRR5560727 | caryopsis | wild_type | 0.58 | MC |
| SRR5560728 | caryopsis | wild_type | 0.94 | MC |
| SRR7265404 | coleoptile | 2dN | 0.30 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265409 | coleoptile | 3dN | 1.32 | MC |
| SRR7265410 | coleoptile | 3dN | 1.80 | MC |
| SRR7265411 | coleoptile | 3dN | 1.12 | MC |
| SRR7265415 | coleoptile | 4dN | 0.54 | MC |
| SRR7265416 | coleoptile | 4dN | 0.68 | MC |
| SRR7265417 | coleoptile | 4dN | 0.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.67 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.28 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.47 | MC |
| SRR7265377 | embryo | 1hA | 0.76 | MC |
| SRR7265378 | embryo | 1hA | 0.71 | MC |
| SRR7265379 | embryo | 1hN | 1.14 | MC |
| SRR7265380 | embryo | 1hN | 0.67 | MC |
| SRR7265381 | embryo | 1hN | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 0.49 | MC |
| SRR7265384 | embryo | 3hA | 0.50 | MC |
| SRR7265385 | embryo | 3hN | 0.94 | MC |
| SRR7265386 | embryo | 3hN | 0.35 | MC |
| SRR7265387 | embryo | 3hN | 0.41 | MC |
| SRR7265389 | embryo | 12hA | 0.47 | MC |
| SRR7265391 | embryo | 12hN | 0.53 | MC |
| SRR7265392 | embryo | 12hN | 0.47 | MC |
| SRR7265399 | embryo | 24hN | 0.55 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.33 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.46 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.02 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.80 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.40 | MC |
| SRR1213691 | flower | wt | 0.40 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.44 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.37 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR504365 | leaf | wt | 0.39 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR6502089 | leaf | control | 0.48 | MC |
| SRR6502090 | leaf | control | 0.65 | MC |
| SRR5856927 | leaf | control | 0.20 | MC |
| SRR5856929 | leaf | control | 0.20 | MC |
| SRR5856930 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR8582893 | panicle | PM | 0.25 | MC |
| SRR5110432 | panicle | Dawn | 0.80 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.45 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.52 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.39 | MC |
| SRR5110446 | panicle | Dusk | 1.14 | MC |
| SRR5110447 | panicle | Dusk | 0.47 | MC |
| SRR5110448 | panicle | Dusk | 0.87 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.80 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.20 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.42 | MC |
| SRR5126147 | root | "mock,1_day" | 0.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126153 | root | "mock,7_days" | 0.36 | MC |
| SRR5126155 | root | "mock,7_days" | 0.47 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR4947491 | root | Al | 1.07 | MC |
| SRR4947501 | root | Al | 0.56 | MC |
| SRR4947505 | root | control | 0.54 | MC |
| SRR4947506 | root | Al | 0.46 | MC |
| SRR4947507 | root | Al | 0.79 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.90 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.70 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.86 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.91 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.81 | MC |
| SRR2154082 | seedling | wt | 0.50 | MC |
| SRR2154084 | seedling | wt | 0.48 | MC |
| SRR2154087 | seedling | wt | 0.93 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.59 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.86 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.85 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.78 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.40 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.33 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.57 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.63 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |