| SRR4457250 | 2nd_leaf | DAH4 | 0.65 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.37 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.42 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR5560727 | caryopsis | wild_type | 0.45 | MC |
| SRR5560728 | caryopsis | wild_type | 0.34 | MC |
| SRR5560729 | caryopsis | wild_type | 0.59 | MC |
| SRR7265400 | coleoptile | 2dA | 0.41 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.58 | MC |
| SRR7265404 | coleoptile | 2dN | 0.52 | MC |
| SRR7265405 | coleoptile | 2dN | 0.62 | MC |
| SRR7265409 | coleoptile | 3dN | 0.49 | MC |
| SRR7265410 | coleoptile | 3dN | 0.51 | MC |
| SRR7265411 | coleoptile | 3dN | 0.46 | MC |
| SRR7265416 | coleoptile | 4dN | 0.56 | MC |
| SRR7265417 | coleoptile | 4dN | 0.61 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.23 | MC |
| SRR7265376 | embryo | 1hA | 0.61 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 0.30 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265380 | embryo | 1hN | 0.43 | MC |
| SRR7265381 | embryo | 1hN | 0.40 | MC |
| SRR7265382 | embryo | 3hA | 0.40 | MC |
| SRR7265383 | embryo | 3hA | 0.75 | MC |
| SRR7265384 | embryo | 3hA | 0.79 | MC |
| SRR7265386 | embryo | 3hN | 0.26 | MC |
| SRR7265387 | embryo | 3hN | 0.32 | MC |
| SRR7265388 | embryo | 12hA | 0.54 | MC |
| SRR7265389 | embryo | 12hA | 0.60 | MC |
| SRR7265390 | embryo | 12hA | 0.54 | MC |
| SRR7265391 | embryo | 12hN | 0.85 | MC |
| SRR7265392 | embryo | 12hN | 0.65 | MC |
| SRR7265393 | embryo | 12hN | 0.66 | MC |
| SRR7265394 | embryo | 24hA | 0.59 | MC |
| SRR7265395 | embryo | 24hA | 0.76 | MC |
| SRR7265396 | embryo | 24hA | 0.63 | MC |
| SRR7265397 | embryo | 24hN | 0.91 | MC |
| SRR7265398 | embryo | 24hN | 0.75 | MC |
| SRR7265399 | embryo | 24hN | 0.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.47 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.44 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.55 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.43 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR8060835 | leaf | wild_type | 0.30 | MC |
| SRR8060836 | leaf | wild_type | 0.49 | MC |
| SRR8060837 | leaf | wild_type | 0.52 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.17 | MC |
| SRR504365 | leaf | wt | 0.41 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR1213692 | leaf | wt | 1.16 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502090 | leaf | control | 0.38 | MC |
| SRR6168973 | leaf | none (control) | 0.25 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR8582893 | panicle | PM | 0.29 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.38 | MC |
| SRR5110446 | panicle | Dusk | 0.56 | MC |
| SRR5110447 | panicle | Dusk | 0.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.36 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.76 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.95 | MC |
| SRR5126147 | root | "mock,1_day" | 0.82 | MC |
| SRR5126148 | root | "mock,1_day" | 0.68 | MC |
| SRR5126149 | root | "mock,1_day" | 0.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.04 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.84 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126153 | root | "mock,7_days" | 0.62 | MC |
| SRR5126155 | root | "mock,7_days" | 0.70 | MC |
| SRR5126157 | root | "mock,7_days" | 0.67 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126165 | root | "mock,14_days" | 0.97 | MC |
| SRR5126167 | root | "mock,14_days" | 0.72 | MC |
| SRR5126169 | root | "mock,14_days" | 0.59 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.76 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.78 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.40 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502108 | root | control | 0.40 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.33 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.47 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.45 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.52 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.35 | MC |
| SRR2154085 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.63 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.14 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.74 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.70 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.21 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.67 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.02 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.95 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.78 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.68 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.58 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.37 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.37 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.41 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.30 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.50 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.79 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.70 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.77 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.13 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.82 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.11 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.92 | MC |