| SRR4457249 | 2nd_leaf | DAH4 | 0.76 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.03 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.94 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.93 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.91 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.54 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.20 | MC |
| SRR358798 | callus | wt | 1.08 | MC |
| SRR7265412 | coleoptile | 4dA | 1.43 | MC |
| SRR7265413 | coleoptile | 4dA | 1.26 | MC |
| SRR7265414 | coleoptile | 4dA | 1.15 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.22 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.47 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.99 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.92 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR7265394 | embryo | 24hA | 1.57 | MC |
| SRR7265395 | embryo | 24hA | 0.77 | MC |
| SRR7265396 | embryo | 24hA | 0.96 | MC |
| SRR7265397 | embryo | 24hN | 1.50 | MC |
| SRR7265398 | embryo | 24hN | 1.09 | MC |
| SRR7265399 | embryo | 24hN | 0.82 | MC |
| SRR976168 | flag_leaf | wild_type | 1.35 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.59 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.56 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.61 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.42 | MC |
| SRR8060836 | leaf | wild_type | 0.28 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.43 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.16 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.65 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.61 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR504365 | leaf | wt | 0.52 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.73 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.75 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR5856930 | leaf | salt | 1.71 | MC |
| SRR5856931 | leaf | salt | 0.66 | MC |
| SRR5856932 | leaf | salt | 0.78 | MC |
| SRR5856933 | leaf | control | 2.04 | MC |
| SRR5856936 | leaf | salt | 1.30 | MC |
| SRR5856937 | leaf | salt | 1.63 | MC |
| SRR5856938 | leaf | salt | 1.52 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.30 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.46 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.57 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.50 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.01 | MC |
| SRR6168981 | leaf | none (control) | 0.70 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.22 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.74 | MC |
| SRR5110430 | panicle | Dawn | 4.78 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.68 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.13 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.93 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.61 | MC |
| SRR5110445 | panicle | Dusk | 2.95 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.27 | MC |
| SRR5126149 | root | "mock,1_day" | 0.83 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.98 | MC |
| SRR5126153 | root | "mock,7_days" | 0.83 | MC |
| SRR5126155 | root | "mock,7_days" | 0.40 | MC |
| SRR5126157 | root | "mock,7_days" | 0.43 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.70 | MC |
| SRR5126165 | root | "mock,14_days" | 0.67 | MC |
| SRR5126167 | root | "mock,14_days" | 1.68 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.93 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.82 | MC |
| SRR1213694 | root | wt | 0.75 | MC |
| SRR1213695 | root | wt | 0.46 | MC |
| SRR4947491 | root | Al | 3.70 | MC |
| SRR4947498 | root | Al | 5.56 | MC |
| SRR4947502 | root | control | 2.45 | MC |
| SRR4947507 | root | Al | 3.37 | MC |
| SRR2154086 | seedling | wt | 0.44 | MC |
| SRR2154082 | seedling | wt | 0.58 | MC |
| SRR2154085 | seedling | wt | 0.60 | MC |
| SRR2154087 | seedling | wt | 0.76 | MC |
| SRR3098741 | seedling | wt | 0.24 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.81 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.86 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.75 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.05 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.45 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.90 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.19 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.27 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.14 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.80 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.29 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.54 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.01 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.85 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |