| SRR3745125 | anther | wt | 0.70 | MC |
| SRR3745126 | anther | wt | 1.66 | MC |
| SRR3745127 | anther | wt | 1.00 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 0.49 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR4947495 | root | control | 0.85 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.30 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.47 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.35 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.34 | MC |
| SRR1213691 | flower | wt | 1.16 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8240824 | leaf | wild_type | 0.54 | MC |
| SRR8240826 | leaf | wild_type | 0.24 | MC |
| SRR8240818 | leaf | wild_type | 0.79 | MC |
| SRR8240819 | leaf | wild_type | 0.44 | MC |
| SRR8240820 | leaf | wild_type | 0.23 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.46 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.20 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.35 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.43 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.35 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.48 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.51 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.48 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.51 | MC |
| SRR1761530 | leaf | control | 0.48 | MC |
| SRR1761531 | leaf | control | 0.51 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.65 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR1213693 | leaf | wt | 0.33 | MC |
| SRR6502088 | leaf | control | 0.30 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.52 | MC |
| SRR6502100 | leaf | control | 0.35 | MC |
| SRR5856930 | leaf | salt | 0.18 | MC |
| SRR8582888 | panicle | AM | 0.35 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.32 | MC |
| SRR8582893 | panicle | PM | 0.26 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.53 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.64 | MC |
| SRR1633182 | panicle | WT | 0.71 | MC |
| SRR1633185 | panicle | WT | 0.84 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213695 | root | wt | 0.31 | MC |
| SRR4947479 | root | control | 0.56 | MC |
| SRR4947482 | root | Al | 0.32 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947490 | root | Al | 0.47 | MC |
| SRR4947494 | root | control | 0.57 | MC |
| SRR4947498 | root | Al | 0.66 | MC |
| SRR4947502 | root | control | 0.62 | MC |
| SRR4947503 | root | control | 0.54 | MC |
| SRR4947504 | root | control | 0.74 | MC |
| SRR4947508 | root | Al | 0.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502107 | root | control | 0.50 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.25 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.22 | MC |
| SRR2154086 | seedling | wt | 0.39 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.24 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.56 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.23 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.62 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.64 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.28 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.50 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.48 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.35 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.47 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.53 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.40 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.56 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.27 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.33 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.35 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.55 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |