| SRR5560727 | caryopsis | wild_type | 0.25 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR7265388 | embryo | 12hA | 0.88 | MC |
| SRR7265389 | embryo | 12hA | 0.63 | MC |
| SRR7265390 | embryo | 12hA | 0.83 | MC |
| SRR7265392 | embryo | 12hN | 0.51 | MC |
| SRR7265393 | embryo | 12hN | 0.49 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265397 | embryo | 24hN | 0.54 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.50 | MC |
| SRR1213691 | flower | wt | 0.42 | MC |
| SRR504365 | leaf | wt | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR1213692 | leaf | wt | 1.57 | MC |
| SRR1213693 | leaf | wt | 0.28 | MC |
| SRR8582888 | panicle | AM | 0.47 | MC |
| SRR8582889 | panicle | AM | 0.25 | MC |
| SRR8582890 | panicle | AM | 0.38 | MC |
| SRR8582891 | panicle | PM | 0.55 | MC |
| SRR8582892 | panicle | PM | 1.14 | MC |
| SRR8582893 | panicle | PM | 0.97 | MC |
| SRR1633182 | panicle | WT | 2.14 | MC |
| SRR1633185 | panicle | WT | 3.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.46 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.70 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.83 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.97 | MC |
| SRR5126147 | root | "mock,1_day" | 0.34 | MC |
| SRR5126148 | root | "mock,1_day" | 0.29 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126153 | root | "mock,7_days" | 0.33 | MC |
| SRR5126155 | root | "mock,7_days" | 0.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126167 | root | "mock,14_days" | 0.39 | MC |
| SRR5126169 | root | "mock,14_days" | 0.38 | MC |
| SRR1213694 | root | wt | 0.29 | MC |
| SRR1213695 | root | wt | 0.34 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.41 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.67 | MC |
| SRR2154086 | seedling | wt | 0.44 | MC |
| SRR2154087 | seedling | wt | 0.73 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.33 | MC |
| SRR3098743 | seedling | wt | 0.40 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.00 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.28 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.12 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.51 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.85 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.87 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.57 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.55 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.50 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.80 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.77 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.68 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.25 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.46 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.58 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.83 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.40 | MC |