| SRR358795 | callus | wt | 4.53 | MC |
| SRR358796 | callus | wt | 4.20 | MC |
| SRR358797 | callus | wt | 4.50 | MC |
| SRR358798 | callus | wt | 5.24 | MC |
| SRR5560729 | caryopsis | wild_type | 1.24 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.61 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.83 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.14 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.56 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.87 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.21 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.98 | MC |
| SRR7265376 | embryo | 1hA | 2.26 | MC |
| SRR7265377 | embryo | 1hA | 2.67 | MC |
| SRR7265378 | embryo | 1hA | 2.22 | MC |
| SRR7265379 | embryo | 1hN | 1.42 | MC |
| SRR7265380 | embryo | 1hN | 2.13 | MC |
| SRR7265381 | embryo | 1hN | 2.37 | MC |
| SRR7265388 | embryo | 12hA | 0.64 | MC |
| SRR7265389 | embryo | 12hA | 1.13 | MC |
| SRR7265390 | embryo | 12hA | 0.92 | MC |
| SRR7265391 | embryo | 12hN | 4.11 | MC |
| SRR7265392 | embryo | 12hN | 3.05 | MC |
| SRR7265393 | embryo | 12hN | 3.92 | MC |
| SRR7265398 | embryo | 24hN | 0.89 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.42 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.90 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.59 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.68 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.79 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.60 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.57 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.30 | MC |
| SRR504365 | leaf | wt | 0.20 | MC |
| SRR6417967 | leaf | H2O_control | 3.91 | MC |
| SRR6417969 | leaf | H2O_control | 0.38 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.02 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR1213692 | leaf | wt | 0.39 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.86 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.56 | MC |
| SRR6502089 | leaf | control | 0.72 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.76 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502101 | leaf | control | 0.39 | MC |
| SRR6502102 | leaf | control | 0.35 | MC |
| SRR5856938 | leaf | salt | 0.15 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 10.25 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.44 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR8582891 | panicle | PM | 0.73 | MC |
| SRR8582892 | panicle | PM | 1.17 | MC |
| SRR8582893 | panicle | PM | 0.93 | MC |
| SRR5110429 | panicle | Dawn | 0.80 | MC |
| SRR5110430 | panicle | Dawn | 0.93 | MC |
| SRR5110431 | panicle | Dawn | 0.85 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.23 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.47 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.90 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.93 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.77 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.03 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.98 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.62 | MC |
| SRR5110445 | panicle | Dusk | 1.35 | MC |
| SRR5110446 | panicle | Dusk | 0.82 | MC |
| SRR5110447 | panicle | Dusk | 0.35 | MC |
| SRR5110448 | panicle | Dusk | 0.97 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.83 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.74 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.07 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.56 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.53 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.96 | MC |
| SRR1633185 | panicle | WT | 0.58 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.37 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.42 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.48 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.56 | MC |
| SRR5126147 | root | "mock,1_day" | 0.32 | MC |
| SRR5126148 | root | "mock,1_day" | 0.70 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.58 | MC |
| SRR5126167 | root | "mock,14_days" | 1.58 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.51 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.41 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947482 | root | Al | 0.53 | MC |
| SRR4947483 | root | Al | 0.76 | MC |
| SRR4947490 | root | Al | 0.90 | MC |
| SRR4947498 | root | Al | 0.56 | MC |
| SRR4947502 | root | control | 0.47 | MC |
| SRR4947506 | root | Al | 1.93 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.41 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.38 | MC |
| SRR2154086 | seedling | wt | 0.84 | MC |
| SRR2154082 | seedling | wt | 0.29 | MC |
| SRR2154083 | seedling | wt | 1.87 | MC |
| SRR2154084 | seedling | wt | 1.36 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.33 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.47 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.70 | MC |
| SRR1944583 | seedling | no_treatment | 2.53 | MC |
| SRR358791 | seedling | wt | 2.58 | MC |
| SRR358792 | seedling | wt | 2.91 | MC |
| SRR358793 | seedling | wt | 0.60 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.79 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.50 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.66 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.65 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.07 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.30 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.98 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.76 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.04 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |