| SRR4457251 | 2nd_leaf | DAH4 | 0.32 | MC |
| SRR5560728 | caryopsis | wild_type | 0.27 | MC |
| SRR5560729 | caryopsis | wild_type | 0.41 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.51 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR7265382 | embryo | 3hA | 0.64 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.34 | MC |
| SRR8240824 | leaf | wild_type | 1.04 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.20 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.29 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213692 | leaf | wt | 0.31 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6168973 | leaf | none (control) | 0.43 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.95 | MC |
| SRR6168979 | leaf | none (control) | 0.42 | MC |
| SRR6168981 | leaf | none (control) | 0.70 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.99 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR8582888 | panicle | AM | 0.55 | MC |
| SRR8582889 | panicle | AM | 0.14 | MC |
| SRR4947496 | root | control | 1.87 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.75 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.63 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.88 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.64 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.30 | MC |
| SRR5126153 | root | "mock,7_days" | 0.78 | MC |
| SRR5126155 | root | "mock,7_days" | 0.50 | MC |
| SRR5126157 | root | "mock,7_days" | 0.44 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.50 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126165 | root | "mock,14_days" | 0.63 | MC |
| SRR5126169 | root | "mock,14_days" | 0.53 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.32 | MC |
| SRR1213694 | root | wt | 0.26 | MC |
| SRR1213695 | root | wt | 0.18 | MC |
| SRR4947480 | root | control | 2.11 | MC |
| SRR4947481 | root | control | 1.59 | MC |
| SRR4947484 | root | Al | 2.09 | MC |
| SRR4947485 | root | Al | 1.32 | MC |
| SRR4947488 | root | control | 0.55 | MC |
| SRR4947489 | root | control | 0.91 | MC |
| SRR4947492 | root | Al | 1.65 | MC |
| SRR4947493 | root | Al | 1.14 | MC |
| SRR4947497 | root | control | 1.67 | MC |
| SRR4947500 | root | Al | 1.55 | MC |
| SRR4947501 | root | Al | 1.77 | MC |
| SRR4947504 | root | control | 1.76 | MC |
| SRR4947505 | root | control | 1.65 | MC |
| SRR4947508 | root | Al | 1.47 | MC |
| SRR4947509 | root | Al | 1.60 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.73 | MC |
| SRR6502096 | root | control | 0.37 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.32 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.43 | MC |
| SRR6502106 | root | control | 0.80 | MC |
| SRR6502107 | root | control | 0.88 | MC |
| SRR6502108 | root | control | 0.85 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.38 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.62 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.31 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR6441555 | seedling | wild_type | 0.24 | MC |
| SRR2154084 | seedling | wt | 0.52 | MC |
| SRR2154087 | seedling | wt | 0.46 | MC |
| SRR3098741 | seedling | wt | 0.24 | MC |
| SRR3098742 | seedling | wt | 0.32 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.34 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.88 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.66 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.33 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.00 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.04 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.59 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.46 | MC |