| SRR4457263 | 2nd_leaf | DAH36 | 4.27 | MC |
| SRR3745126 | anther | wt | 0.50 | MC |
| SRR358795 | callus | wt | 2.80 | MC |
| SRR358796 | callus | wt | 2.80 | MC |
| SRR358797 | callus | wt | 3.51 | MC |
| SRR358798 | callus | wt | 3.67 | MC |
| SRR5560727 | caryopsis | wild_type | 4.61 | MC |
| SRR5560728 | caryopsis | wild_type | 4.47 | MC |
| SRR5560729 | caryopsis | wild_type | 4.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.22 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.43 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.40 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.23 | MC |
| SRR7265400 | coleoptile | 2dA | 3.16 | MC |
| SRR7265402 | coleoptile | 2dA | 3.39 | MC |
| SRR7265403 | coleoptile | 2dN | 3.74 | MC |
| SRR7265404 | coleoptile | 2dN | 2.50 | MC |
| SRR7265405 | coleoptile | 2dN | 3.01 | MC |
| SRR7265409 | coleoptile | 3dN | 3.87 | MC |
| SRR7265410 | coleoptile | 3dN | 2.46 | MC |
| SRR7265411 | coleoptile | 3dN | 2.94 | MC |
| SRR7265415 | coleoptile | 4dN | 3.18 | MC |
| SRR7265416 | coleoptile | 4dN | 2.77 | MC |
| SRR7265417 | coleoptile | 4dN | 2.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.35 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.87 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.32 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.08 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.08 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.58 | MC |
| SRR7265382 | embryo | 3hA | 3.21 | MC |
| SRR7265383 | embryo | 3hA | 3.84 | MC |
| SRR7265384 | embryo | 3hA | 3.82 | MC |
| SRR7265388 | embryo | 12hA | 3.82 | MC |
| SRR7265389 | embryo | 12hA | 3.64 | MC |
| SRR7265390 | embryo | 12hA | 2.87 | MC |
| SRR7265391 | embryo | 12hN | 2.66 | MC |
| SRR7265392 | embryo | 12hN | 2.33 | MC |
| SRR7265393 | embryo | 12hN | 2.91 | MC |
| SRR7265394 | embryo | 24hA | 3.11 | MC |
| SRR7265395 | embryo | 24hA | 2.53 | MC |
| SRR7265396 | embryo | 24hA | 3.16 | MC |
| SRR7265397 | embryo | 24hN | 3.58 | MC |
| SRR7265398 | embryo | 24hN | 2.48 | MC |
| SRR7265399 | embryo | 24hN | 2.71 | MC |
| SRR2338867 | endosprem | control | 0.70 | MC |
| SRR2338868 | endosprem | high_temperature | 1.02 | MC |
| SRR2338869 | endosprem | high_temperature | 0.74 | MC |
| SRR976168 | flag_leaf | wild_type | 0.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.14 | MC |
| SRR1213691 | flower | wt | 3.26 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.99 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.83 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.14 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.73 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.95 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.83 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.18 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.96 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.04 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.95 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.59 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.01 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.05 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.93 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.72 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.71 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.25 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.23 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.18 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.63 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.18 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.63 | MC |
| SRR1761528 | leaf | drought | 3.18 | MC |
| SRR1761529 | leaf | drought | 2.63 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.50 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.41 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.25 | MC |
| SRR6417967 | leaf | H2O_control | 2.71 | MC |
| SRR6417968 | leaf | H2O_control | 2.61 | MC |
| SRR6417969 | leaf | H2O_control | 2.21 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.50 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.20 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.32 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.14 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 4.25 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.50 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.68 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.91 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.46 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.11 | MC |
| SRR6168973 | leaf | none (control) | 2.29 | MC |
| SRR6168974 | leaf | none (control) | 2.63 | MC |
| SRR6168975 | leaf | none (control) | 2.26 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.19 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.53 | MC |
| SRR6168981 | leaf | none (control) | 1.06 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.74 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.11 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.93 | MC |
| SRR8582889 | panicle | AM | 1.61 | MC |
| SRR4947496 | root | control | 3.02 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.95 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.83 | MC |
| SRR1633182 | panicle | WT | 3.57 | MC |
| SRR1633185 | panicle | WT | 5.17 | MC |
| SRR5126147 | root | "mock,1_day" | 3.65 | MC |
| SRR5126148 | root | "mock,1_day" | 3.47 | MC |
| SRR5126149 | root | "mock,1_day" | 4.72 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.62 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.83 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.17 | MC |
| SRR4947480 | root | control | 4.15 | MC |
| SRR4947484 | root | Al | 3.16 | MC |
| SRR4947485 | root | Al | 4.16 | MC |
| SRR4947488 | root | control | 2.20 | MC |
| SRR4947489 | root | control | 2.58 | MC |
| SRR4947492 | root | Al | 3.68 | MC |
| SRR4947493 | root | Al | 2.69 | MC |
| SRR4947497 | root | control | 3.45 | MC |
| SRR4947500 | root | Al | 3.02 | MC |
| SRR4947501 | root | Al | 3.98 | MC |
| SRR4947504 | root | control | 2.80 | MC |
| SRR4947505 | root | control | 3.23 | MC |
| SRR4947508 | root | Al | 3.23 | MC |
| SRR4947509 | root | Al | 2.97 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.64 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.09 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.82 | MC |
| SRR6502094 | root | control | 3.34 | MC |
| SRR6502095 | root | control | 3.36 | MC |
| SRR6502096 | root | control | 3.30 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.82 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.76 | MC |
| SRR6502106 | root | control | 2.90 | MC |
| SRR6502107 | root | control | 2.89 | MC |
| SRR6502108 | root | control | 3.42 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.90 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.07 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.55 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.58 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.41 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.55 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.06 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.86 | MC |
| SRR6441554 | seedling | wild_type | 2.86 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.85 | MC |
| SRR1944583 | seedling | no_treatment | 4.20 | MC |
| SRR358793 | seedling | wt | 2.95 | MC |
| SRR358794 | seedling | wt | 3.44 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.02 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.02 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.05 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.48 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.35 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.39 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.59 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.41 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.03 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.49 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.72 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.81 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.72 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.59 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.28 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.48 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.24 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.07 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.11 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.69 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.93 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.36 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.57 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.13 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.30 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.24 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.71 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.59 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.49 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.44 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.10 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.04 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.18 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.44 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.04 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.01 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.39 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.24 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.50 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.81 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.77 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.38 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.56 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.89 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.39 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.36 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.98 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.20 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.09 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.89 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.92 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.42 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.78 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.14 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.68 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.68 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.50 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.60 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.05 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.42 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.72 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.06 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.78 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.83 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.91 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.48 | MC |