| SRR4457264 | 2nd_leaf | DAH44 | 4.45 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 6.39 | MC |
| SRR358795 | callus | wt | 4.51 | MC |
| SRR358796 | callus | wt | 5.48 | MC |
| SRR358797 | callus | wt | 3.81 | MC |
| SRR358798 | callus | wt | 6.74 | MC |
| SRR6320498 | carpel | wt | 5.51 | MC |
| SRR5560727 | caryopsis | wild_type | 4.56 | MC |
| SRR7265400 | coleoptile | 2dA | 3.03 | MC |
| SRR7265401 | coleoptile | 2dA | 3.35 | MC |
| SRR7265402 | coleoptile | 2dA | 2.65 | MC |
| SRR7265408 | coleoptile | 3dA | 2.77 | MC |
| SRR7265409 | coleoptile | 3dN | 3.52 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.87 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.50 | MC |
| SRR7265376 | embryo | 1hA | 2.54 | MC |
| SRR7265377 | embryo | 1hA | 1.49 | MC |
| SRR7265378 | embryo | 1hA | 1.55 | MC |
| SRR7265379 | embryo | 1hN | 1.66 | MC |
| SRR7265380 | embryo | 1hN | 2.41 | MC |
| SRR7265381 | embryo | 1hN | 2.74 | MC |
| SRR7265382 | embryo | 3hA | 2.91 | MC |
| SRR7265383 | embryo | 3hA | 2.72 | MC |
| SRR7265384 | embryo | 3hA | 2.43 | MC |
| SRR7265385 | embryo | 3hN | 1.78 | MC |
| SRR7265386 | embryo | 3hN | 1.82 | MC |
| SRR7265387 | embryo | 3hN | 1.64 | MC |
| SRR7265391 | embryo | 12hN | 4.45 | MC |
| SRR7265394 | embryo | 24hA | 4.23 | MC |
| SRR7265395 | embryo | 24hA | 4.42 | MC |
| SRR7265399 | embryo | 24hN | 3.44 | MC |
| SRR2338866 | endosprem | control | 3.40 | MC |
| SRR2338867 | endosprem | control | 0.94 | MC |
| SRR2338868 | endosprem | high_temperature | 1.80 | MC |
| SRR2338869 | endosprem | high_temperature | 1.81 | MC |
| SRR976168 | flag_leaf | wild_type | 2.57 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.95 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.54 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.11 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.85 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.55 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.21 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.02 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.05 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.82 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.19 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.50 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.57 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.25 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.57 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.25 | MC |
| SRR1761528 | leaf | drought | 3.57 | MC |
| SRR1761529 | leaf | drought | 5.25 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.62 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.26 | MC |
| SRR1213692 | leaf | wt | 3.21 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.34 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.09 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.68 | MC |
| SRR6502100 | leaf | control | 1.39 | MC |
| SRR6502101 | leaf | control | 0.41 | MC |
| SRR6502102 | leaf | control | 0.74 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.90 | MC |
| SRR6168973 | leaf | none (control) | 3.45 | MC |
| SRR6168974 | leaf | none (control) | 1.58 | MC |
| SRR6168975 | leaf | none (control) | 4.20 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.02 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.57 | MC |
| SRR6168979 | leaf | none (control) | 0.79 | MC |
| SRR6168980 | leaf | none (control) | 0.37 | MC |
| SRR6168981 | leaf | none (control) | 1.64 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.01 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR8582888 | panicle | AM | 3.15 | MC |
| SRR8582891 | panicle | PM | 5.18 | MC |
| SRR8582892 | panicle | PM | 5.27 | MC |
| SRR5110448 | panicle | Dusk | 5.32 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.40 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.79 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.85 | MC |
| SRR1633182 | panicle | WT | 0.66 | MC |
| SRR1633185 | panicle | WT | 1.17 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.83 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.00 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.17 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.29 | MC |
| SRR1213694 | root | wt | 2.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.59 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.96 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.97 | MC |
| SRR6502106 | root | control | 3.76 | MC |
| SRR6502107 | root | control | 3.76 | MC |
| SRR6502108 | root | control | 3.28 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.03 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.66 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.42 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.35 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.85 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.13 | MC |
| SRR1944583 | seedling | no_treatment | 4.23 | MC |
| SRR358791 | seedling | wt | 2.20 | MC |
| SRR358792 | seedling | wt | 2.32 | MC |
| SRR358793 | seedling | wt | 3.30 | MC |
| SRR358794 | seedling | wt | 3.68 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.03 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.05 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.29 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.57 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.46 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.07 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.89 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.19 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.66 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.70 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.70 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.16 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.17 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.60 | MC |