| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR358797 | callus | wt | 1.28 | MC |
| SRR6320473 | carpel | wt | 2.99 | MC |
| SRR6320498 | carpel | wt | 2.05 | MC |
| SRR5560727 | caryopsis | wild_type | 1.07 | MC |
| SRR5560728 | caryopsis | wild_type | 1.78 | MC |
| SRR5560729 | caryopsis | wild_type | 0.52 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.89 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR4947495 | root | control | 0.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR7265400 | coleoptile | 2dA | 0.38 | MC |
| SRR7265401 | coleoptile | 2dA | 0.52 | MC |
| SRR7265402 | coleoptile | 2dA | 0.47 | MC |
| SRR7265403 | coleoptile | 2dN | 0.83 | MC |
| SRR7265404 | coleoptile | 2dN | 0.89 | MC |
| SRR7265405 | coleoptile | 2dN | 1.09 | MC |
| SRR7265407 | coleoptile | 3dA | 0.90 | MC |
| SRR7265409 | coleoptile | 3dN | 1.03 | MC |
| SRR7265410 | coleoptile | 3dN | 0.84 | MC |
| SRR7265411 | coleoptile | 3dN | 0.80 | MC |
| SRR7265416 | coleoptile | 4dN | 0.89 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.58 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.25 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.25 | MC |
| SRR7265388 | embryo | 12hA | 0.86 | MC |
| SRR7265389 | embryo | 12hA | 1.08 | MC |
| SRR7265390 | embryo | 12hA | 1.51 | MC |
| SRR7265391 | embryo | 12hN | 0.48 | MC |
| SRR7265392 | embryo | 12hN | 0.68 | MC |
| SRR7265393 | embryo | 12hN | 0.97 | MC |
| SRR7265395 | embryo | 24hA | 1.13 | MC |
| SRR7265396 | embryo | 24hA | 0.62 | MC |
| SRR7265397 | embryo | 24hN | 1.23 | MC |
| SRR7265398 | embryo | 24hN | 0.73 | MC |
| SRR7265399 | embryo | 24hN | 0.64 | MC |
| SRR2338866 | endosprem | control | 1.00 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.80 | MC |
| SRR1213691 | flower | wt | 0.36 | MC |
| SRR8240820 | leaf | wild_type | 0.37 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.25 | MC |
| SRR504365 | leaf | wt | 0.22 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR1213693 | leaf | wt | 1.04 | MC |
| SRR6502100 | leaf | control | 0.41 | MC |
| SRR5856927 | leaf | control | 1.33 | MC |
| SRR5856928 | leaf | control | 1.58 | MC |
| SRR5856929 | leaf | control | 1.56 | MC |
| SRR5856930 | leaf | salt | 0.88 | MC |
| SRR5856931 | leaf | salt | 1.17 | MC |
| SRR5856932 | leaf | salt | 0.78 | MC |
| SRR5856933 | leaf | control | 1.95 | MC |
| SRR5856934 | leaf | control | 1.97 | MC |
| SRR5856935 | leaf | control | 0.86 | MC |
| SRR5856936 | leaf | salt | 1.23 | MC |
| SRR5856937 | leaf | salt | 0.96 | MC |
| SRR5856938 | leaf | salt | 0.92 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.73 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.25 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.03 | MC |
| SRR6168974 | leaf | none (control) | 0.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR6168981 | leaf | none (control) | 1.29 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR8582893 | panicle | PM | 0.23 | MC |
| SRR5110429 | panicle | Dawn | 0.83 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.39 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.54 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.00 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.87 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.60 | MC |
| SRR5110445 | panicle | Dusk | 0.59 | MC |
| SRR5110446 | panicle | Dusk | 1.86 | MC |
| SRR5110447 | panicle | Dusk | 1.50 | MC |
| SRR5110448 | panicle | Dusk | 1.76 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.79 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.12 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.82 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.07 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.12 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.39 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.45 | MC |
| SRR1633185 | panicle | WT | 0.31 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.27 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.55 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.63 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126155 | root | "mock,7_days" | 1.09 | MC |
| SRR5126157 | root | "mock,7_days" | 0.48 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.86 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.23 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.54 | MC |
| SRR5126165 | root | "mock,14_days" | 1.47 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.52 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.81 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.83 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR1213694 | root | wt | 0.22 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR4947479 | root | control | 0.92 | MC |
| SRR4947482 | root | Al | 0.58 | MC |
| SRR4947483 | root | Al | 0.89 | MC |
| SRR4947490 | root | Al | 0.53 | MC |
| SRR4947491 | root | Al | 1.14 | MC |
| SRR4947498 | root | Al | 0.55 | MC |
| SRR4947499 | root | Al | 1.05 | MC |
| SRR4947502 | root | control | 0.54 | MC |
| SRR4947503 | root | control | 1.02 | MC |
| SRR4947505 | root | control | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.40 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502094 | root | control | 0.55 | MC |
| SRR6502107 | root | control | 0.29 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.63 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.26 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR2154086 | seedling | wt | 0.47 | MC |
| SRR2154082 | seedling | wt | 1.49 | MC |
| SRR2154083 | seedling | wt | 1.49 | MC |
| SRR2154084 | seedling | wt | 0.63 | MC |
| SRR2154087 | seedling | wt | 0.44 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.44 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.09 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.22 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.66 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.51 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.89 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.16 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.72 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.30 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.38 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.62 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.70 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.39 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.06 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.90 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.99 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.33 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.83 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.10 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.87 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.63 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.29 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.14 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.92 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.52 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.70 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.29 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.59 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.19 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.90 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.17 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.82 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.69 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.92 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.35 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.63 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.89 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.52 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.66 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |