| SRR3745125 | anther | wt | 2.35 | MC |
| SRR3745126 | anther | wt | 2.96 | MC |
| SRR3745127 | anther | wt | 2.89 | MC |
| SRR358795 | callus | wt | 3.41 | MC |
| SRR358796 | callus | wt | 3.90 | MC |
| SRR358797 | callus | wt | 4.13 | MC |
| SRR358798 | callus | wt | 5.03 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR7265401 | coleoptile | 2dA | 0.31 | MC |
| SRR7265403 | coleoptile | 2dN | 0.58 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265407 | coleoptile | 3dA | 0.31 | MC |
| SRR7265411 | coleoptile | 3dN | 0.33 | MC |
| SRR7265414 | coleoptile | 4dA | 0.61 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.40 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.50 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.97 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265377 | embryo | 1hA | 0.73 | MC |
| SRR7265379 | embryo | 1hN | 1.15 | MC |
| SRR7265380 | embryo | 1hN | 0.59 | MC |
| SRR7265381 | embryo | 1hN | 0.55 | MC |
| SRR7265382 | embryo | 3hA | 0.81 | MC |
| SRR7265383 | embryo | 3hA | 0.53 | MC |
| SRR7265386 | embryo | 3hN | 0.83 | MC |
| SRR7265387 | embryo | 3hN | 0.67 | MC |
| SRR7265388 | embryo | 12hA | 0.61 | MC |
| SRR7265391 | embryo | 12hN | 0.68 | MC |
| SRR7265392 | embryo | 12hN | 0.47 | MC |
| SRR7265393 | embryo | 12hN | 0.55 | MC |
| SRR7265396 | embryo | 24hA | 0.50 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.43 | MC |
| SRR1213691 | flower | wt | 2.43 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.55 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.13 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.42 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.07 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.28 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.56 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.35 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.88 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.88 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.21 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.83 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.66 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.56 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.04 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.16 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.90 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.21 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.25 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.62 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.32 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.29 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.77 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.34 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.49 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.96 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.02 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.42 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.77 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.75 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.16 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.56 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.30 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.75 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.16 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.56 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.30 | MC |
| SRR1761528 | leaf | drought | 1.75 | MC |
| SRR1761529 | leaf | drought | 2.16 | MC |
| SRR1761530 | leaf | control | 2.56 | MC |
| SRR1761531 | leaf | control | 3.30 | MC |
| SRR504365 | leaf | wt | 3.27 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.39 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.65 | MC |
| SRR6417967 | leaf | H2O_control | 0.55 | MC |
| SRR6417969 | leaf | H2O_control | 0.98 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.25 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.24 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.23 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.60 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.01 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.95 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.91 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.09 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.10 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.35 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.65 | MC |
| SRR1213692 | leaf | wt | 2.36 | MC |
| SRR1213693 | leaf | wt | 1.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.27 | MC |
| SRR6502088 | leaf | control | 0.77 | MC |
| SRR6502089 | leaf | control | 0.42 | MC |
| SRR6502090 | leaf | control | 0.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.95 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.80 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.60 | MC |
| SRR6502101 | leaf | control | 3.32 | MC |
| SRR6502102 | leaf | control | 3.16 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.56 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.27 | MC |
| SRR8582889 | panicle | AM | 0.68 | MC |
| SRR8582890 | panicle | AM | 0.81 | MC |
| SRR8582891 | panicle | PM | 0.49 | MC |
| SRR8582893 | panicle | PM | 1.28 | MC |
| SRR5110432 | panicle | Dawn | 3.53 | MC |
| SRR4947496 | root | control | 2.48 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.51 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.07 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.55 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.09 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.23 | MC |
| SRR5110459 | panicle | Dawn + 21h | 4.21 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.36 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.29 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.13 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.65 | MC |
| SRR5126153 | root | "mock,7_days" | 0.97 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126165 | root | "mock,14_days" | 0.53 | MC |
| SRR5126169 | root | "mock,14_days" | 0.96 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.44 | MC |
| SRR1213694 | root | wt | 0.87 | MC |
| SRR1213695 | root | wt | 2.38 | MC |
| SRR4947480 | root | control | 4.00 | MC |
| SRR4947484 | root | Al | 3.20 | MC |
| SRR4947485 | root | Al | 4.46 | MC |
| SRR4947488 | root | control | 3.83 | MC |
| SRR4947489 | root | control | 4.43 | MC |
| SRR4947492 | root | Al | 4.51 | MC |
| SRR4947493 | root | Al | 3.41 | MC |
| SRR4947497 | root | control | 4.73 | MC |
| SRR4947504 | root | control | 3.93 | MC |
| SRR4947508 | root | Al | 3.37 | MC |
| SRR4947509 | root | Al | 3.36 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.79 | MC |
| SRR6502096 | root | control | 0.93 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.35 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.14 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.12 | MC |
| SRR6502106 | root | control | 1.62 | MC |
| SRR6502107 | root | control | 2.16 | MC |
| SRR6502108 | root | control | 3.14 | MC |
| SRR1944583 | seedling | no_treatment | 1.44 | MC |
| SRR358791 | seedling | wt | 3.92 | MC |
| SRR358792 | seedling | wt | 4.52 | MC |
| SRR358793 | seedling | wt | 3.56 | MC |
| SRR358794 | seedling | wt | 3.56 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.08 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.16 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.00 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.28 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.16 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.74 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.77 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.56 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.18 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.71 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.53 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.84 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.85 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.66 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.16 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.73 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.15 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.21 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.22 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.99 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.07 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.95 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.45 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.09 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.07 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.49 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.20 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.08 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.83 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.69 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.65 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.85 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.55 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.18 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.24 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.53 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.21 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.42 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.03 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.49 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.39 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.93 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.64 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.26 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.37 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.72 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.75 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.03 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.05 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.22 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |