| SRR3745125 | anther | wt | 2.56 | MC |
| SRR3745126 | anther | wt | 1.35 | MC |
| SRR5560727 | caryopsis | wild_type | 2.05 | MC |
| SRR5560728 | caryopsis | wild_type | 1.56 | MC |
| SRR5560729 | caryopsis | wild_type | 1.90 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.79 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.49 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.40 | MC |
| SRR7265378 | embryo | 1hA | 0.39 | MC |
| SRR7265379 | embryo | 1hN | 0.32 | MC |
| SRR7265382 | embryo | 3hA | 0.83 | MC |
| SRR7265384 | embryo | 3hA | 0.71 | MC |
| SRR7265385 | embryo | 3hN | 1.01 | MC |
| SRR7265386 | embryo | 3hN | 0.37 | MC |
| SRR7265387 | embryo | 3hN | 0.53 | MC |
| SRR7265388 | embryo | 12hA | 0.70 | MC |
| SRR7265390 | embryo | 12hA | 0.41 | MC |
| SRR7265391 | embryo | 12hN | 0.82 | MC |
| SRR7265393 | embryo | 12hN | 0.79 | MC |
| SRR2338866 | endosprem | control | 4.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.89 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.63 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.19 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.91 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.08 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.88 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.07 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.38 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.51 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.88 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.32 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.07 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.82 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.40 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.01 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.88 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.05 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.74 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.60 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.09 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.29 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.05 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.19 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.82 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.01 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.91 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.82 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.01 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.91 | MC |
| SRR1761529 | leaf | drought | 4.82 | MC |
| SRR1761530 | leaf | control | 3.98 | MC |
| SRR1761531 | leaf | control | 2.91 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.02 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.59 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.10 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.28 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.78 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.18 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.06 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.85 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.89 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.34 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.85 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.65 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.11 | MC |
| SRR6502100 | leaf | control | 2.64 | MC |
| SRR6502101 | leaf | control | 2.46 | MC |
| SRR6502102 | leaf | control | 3.20 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR8582888 | panicle | AM | 1.41 | MC |
| SRR8582889 | panicle | AM | 0.82 | MC |
| SRR8582890 | panicle | AM | 0.46 | MC |
| SRR8582891 | panicle | PM | 3.17 | MC |
| SRR8582892 | panicle | PM | 3.69 | MC |
| SRR8582893 | panicle | PM | 1.96 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.80 | MC |
| SRR5110446 | panicle | Dusk | 0.87 | MC |
| SRR5110447 | panicle | Dusk | 0.56 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.73 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.89 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.94 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.45 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.68 | MC |
| SRR5126147 | root | "mock,1_day" | 0.76 | MC |
| SRR5126148 | root | "mock,1_day" | 0.72 | MC |
| SRR5126149 | root | "mock,1_day" | 2.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.55 | MC |
| SRR5126153 | root | "mock,7_days" | 2.11 | MC |
| SRR5126155 | root | "mock,7_days" | 1.50 | MC |
| SRR5126157 | root | "mock,7_days" | 2.07 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.52 | MC |
| SRR5126165 | root | "mock,14_days" | 1.75 | MC |
| SRR5126167 | root | "mock,14_days" | 1.51 | MC |
| SRR5126169 | root | "mock,14_days" | 1.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.74 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.13 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.21 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.96 | MC |
| SRR6502106 | root | control | 3.16 | MC |
| SRR6502108 | root | control | 4.74 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.59 | MC |
| SRR6441554 | seedling | wild_type | 1.89 | MC |
| SRR6441555 | seedling | wild_type | 0.86 | MC |
| SRR2154086 | seedling | wt | 1.99 | MC |
| SRR2154082 | seedling | wt | 1.23 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.69 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.89 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.91 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.99 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.75 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.24 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.13 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.89 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.92 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.89 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.92 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.94 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.64 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.93 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.83 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.68 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.77 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.79 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.83 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.99 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.04 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.42 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.46 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.56 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.86 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.52 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.93 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 9.40 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.82 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.72 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.19 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.18 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.75 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.84 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.68 | MC |