| SRR4457249 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.24 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.46 | MC |
| SRR358798 | callus | wt | 3.20 | MC |
| SRR5560727 | caryopsis | wild_type | 1.89 | MC |
| SRR5560728 | caryopsis | wild_type | 1.51 | MC |
| SRR5560729 | caryopsis | wild_type | 1.75 | MC |
| SRR7265400 | coleoptile | 2dA | 0.37 | MC |
| SRR7265403 | coleoptile | 2dN | 1.92 | MC |
| SRR7265404 | coleoptile | 2dN | 1.18 | MC |
| SRR7265405 | coleoptile | 2dN | 0.79 | MC |
| SRR7265407 | coleoptile | 3dA | 0.61 | MC |
| SRR7265409 | coleoptile | 3dN | 0.84 | MC |
| SRR7265410 | coleoptile | 3dN | 0.48 | MC |
| SRR7265411 | coleoptile | 3dN | 0.84 | MC |
| SRR7265416 | coleoptile | 4dN | 0.58 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.59 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.82 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265376 | embryo | 1hA | 0.43 | MC |
| SRR7265377 | embryo | 1hA | 0.36 | MC |
| SRR7265378 | embryo | 1hA | 0.40 | MC |
| SRR7265379 | embryo | 1hN | 0.46 | MC |
| SRR7265381 | embryo | 1hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.43 | MC |
| SRR7265388 | embryo | 12hA | 0.87 | MC |
| SRR7265389 | embryo | 12hA | 0.94 | MC |
| SRR7265390 | embryo | 12hA | 1.06 | MC |
| SRR7265391 | embryo | 12hN | 1.87 | MC |
| SRR7265392 | embryo | 12hN | 0.68 | MC |
| SRR7265393 | embryo | 12hN | 1.14 | MC |
| SRR7265394 | embryo | 24hA | 0.54 | MC |
| SRR7265395 | embryo | 24hA | 1.30 | MC |
| SRR7265397 | embryo | 24hN | 2.91 | MC |
| SRR7265398 | embryo | 24hN | 2.35 | MC |
| SRR7265399 | embryo | 24hN | 1.31 | MC |
| SRR2338866 | endosprem | control | 1.28 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.59 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.48 | MC |
| SRR1213691 | flower | wt | 0.58 | MC |
| SRR8240826 | leaf | wild_type | 0.86 | MC |
| SRR8240818 | leaf | wild_type | 0.23 | MC |
| SRR8240819 | leaf | wild_type | 0.56 | MC |
| SRR8240820 | leaf | wild_type | 0.76 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.02 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.37 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.43 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.81 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.87 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.07 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.72 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.65 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.58 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.28 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.08 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.13 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.85 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.19 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.02 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.14 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.70 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.99 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.06 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.56 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.88 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.44 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.25 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.67 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.73 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.39 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.25 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.67 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.73 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.39 | MC |
| SRR1761528 | leaf | drought | 2.25 | MC |
| SRR1761529 | leaf | drought | 1.67 | MC |
| SRR1761530 | leaf | control | 0.73 | MC |
| SRR1761531 | leaf | control | 1.39 | MC |
| SRR504365 | leaf | wt | 0.33 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.10 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.04 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.00 | MC |
| SRR6417968 | leaf | H2O_control | 0.62 | MC |
| SRR6417969 | leaf | H2O_control | 1.17 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.66 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.05 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.54 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.96 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.05 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.06 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.01 | MC |
| SRR1213692 | leaf | wt | 1.15 | MC |
| SRR1213693 | leaf | wt | 1.47 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502089 | leaf | control | 1.38 | MC |
| SRR6502090 | leaf | control | 0.66 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.54 | MC |
| SRR6502101 | leaf | control | 1.16 | MC |
| SRR6502102 | leaf | control | 0.37 | MC |
| SRR5856927 | leaf | control | 0.24 | MC |
| SRR5856930 | leaf | salt | 0.27 | MC |
| SRR5856931 | leaf | salt | 0.53 | MC |
| SRR5856932 | leaf | salt | 0.49 | MC |
| SRR5856933 | leaf | control | 0.22 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856935 | leaf | control | 0.51 | MC |
| SRR5856936 | leaf | salt | 0.44 | MC |
| SRR5856937 | leaf | salt | 0.19 | MC |
| SRR5856938 | leaf | salt | 0.51 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.36 | MC |
| SRR6168973 | leaf | none (control) | 0.57 | MC |
| SRR6168974 | leaf | none (control) | 0.59 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.49 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.97 | MC |
| SRR6168980 | leaf | none (control) | 0.29 | MC |
| SRR6168981 | leaf | none (control) | 0.29 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.44 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR8582891 | panicle | PM | 0.50 | MC |
| SRR8582893 | panicle | PM | 0.48 | MC |
| SRR5110429 | panicle | Dawn | 0.84 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.50 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.43 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.48 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.38 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.03 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.52 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.58 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.65 | MC |
| SRR1633182 | panicle | WT | 1.67 | MC |
| SRR1633185 | panicle | WT | 2.13 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.12 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.72 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.12 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.19 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.45 | MC |
| SRR5126147 | root | "mock,1_day" | 0.38 | MC |
| SRR5126149 | root | "mock,1_day" | 0.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126155 | root | "mock,7_days" | 0.55 | MC |
| SRR5126157 | root | "mock,7_days" | 0.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.33 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.07 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126167 | root | "mock,14_days" | 0.53 | MC |
| SRR5126169 | root | "mock,14_days" | 1.27 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.40 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.74 | MC |
| SRR1213694 | root | wt | 2.14 | MC |
| SRR1213695 | root | wt | 1.73 | MC |
| SRR4947479 | root | control | 0.81 | MC |
| SRR4947480 | root | control | 1.41 | MC |
| SRR4947481 | root | control | 0.64 | MC |
| SRR4947484 | root | Al | 1.22 | MC |
| SRR4947487 | root | control | 0.70 | MC |
| SRR4947488 | root | control | 1.35 | MC |
| SRR4947489 | root | control | 1.10 | MC |
| SRR4947490 | root | Al | 1.07 | MC |
| SRR4947491 | root | Al | 0.96 | MC |
| SRR4947493 | root | Al | 1.02 | MC |
| SRR4947497 | root | control | 1.38 | MC |
| SRR4947498 | root | Al | 1.25 | MC |
| SRR4947499 | root | Al | 0.46 | MC |
| SRR4947500 | root | Al | 1.05 | MC |
| SRR4947501 | root | Al | 0.53 | MC |
| SRR4947502 | root | control | 1.29 | MC |
| SRR4947505 | root | control | 1.35 | MC |
| SRR4947506 | root | Al | 0.39 | MC |
| SRR4947507 | root | Al | 1.92 | MC |
| SRR4947508 | root | Al | 0.86 | MC |
| SRR4947509 | root | Al | 0.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502094 | root | control | 0.85 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502106 | root | control | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.28 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 1.75 | MC |
| SRR2154083 | seedling | wt | 0.56 | MC |
| SRR2154084 | seedling | wt | 2.64 | MC |
| SRR2154085 | seedling | wt | 0.74 | MC |
| SRR2154087 | seedling | wt | 0.82 | MC |
| SRR3098741 | seedling | wt | 0.24 | MC |
| SRR3098742 | seedling | wt | 0.34 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.85 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.88 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.65 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.91 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.40 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.30 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.40 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.28 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.90 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.55 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.78 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.00 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.12 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.29 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.24 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.07 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.23 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.34 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.96 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.35 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.97 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.29 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.18 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.66 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.12 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.95 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.00 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.02 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.44 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.31 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.86 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.56 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.83 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.52 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.46 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.89 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.47 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.42 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |